Chemical Components in the PDB

pdbe.org/chem
wwPDB
EMDataBank
spacer

PDBeChem : Chemical Bonds

 Molecule : PDM    

Bonds between two atoms of the molecule

Total Number of Bonds: 38


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 CP1 CP2 C C doub 1.39 N Y
2 CP1 CP6 C C sing 1.39 N Y
3 CP1 NP1 C N sing 1.4 N N
4 CP2 CP3 C C sing 1.38 N Y
5 CP2 HP2 C H sing 1.08 N N
6 CP3 CP4 C C doub 1.39 N Y
7 CP3 HP3 C H sing 1.08 N N
8 CP4 CP5 C C sing 1.39 N Y
9 CP4 NP2 C N sing 1.4 N N
10 CP5 CP6 C C doub 1.38 N Y
11 CP5 HP5 C H sing 1.08 N N
12 CP6 HP6 C H sing 1.08 N N
13 CP7 CP8 C C sing 1.53 N N
14 CP7 NP2 C N sing 1.46 N N
15 CP7 OP3 C O sing 1.43 N N
16 CP7 HP7 C H sing 1.09 N N
17 CP8 CP9 C C sing 1.53 N N
18 CP8 HP81 C H sing 1.09 N N
19 CP8 HP82 C H sing 1.09 N N
20 CP9 C10 C C sing 1.51 N N
21 CP9 HP91 C H sing 1.09 N N
22 CP9 HP92 C H sing 1.09 N N
23 C10 OP4 C O sing 1.34 N N
24 C10 OP5 C O doub 1.21 N N
25 C11 NP1 C N sing 1.34 N N
26 C11 OP1 C O doub 1.21 N N
27 C11 C12 C C sing 1.51 N N
28 NP1 C14 N C sing 1.34 N N
29 NP2 HP2N N H sing 0.97 N N
30 OP2 C14 O C doub 1.21 N N
31 OP3 HP3O O H sing 0.97 N N
32 OP4 HP4O O H sing 0.97 N N
33 C12 C13 C C sing 1.54 N N
34 C12 H121 C H sing 1.09 N N
35 C12 H122 C H sing 1.09 N N
36 C14 C13 C C sing 1.51 N N
37 C13 H131 C H sing 1.09 N N
38 C13 H132 C H sing 1.09 N N