Chemical Components in the PDB

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PDBeChem : Chemical Bonds

 Molecule : PFY    

Bonds between two atoms of the molecule

Total Number of Bonds: 82


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 O31 C30 O C doub 1.22 N N
2 C30 N38 C N sing 1.35 N N
3 C30 C23 C C sing 1.47 N N
4 N38 C39 N C sing 1.47 N N
5 N38 C42 N C sing 1.48 N N
6 C39 C43 C C sing 1.53 N N
7 C39 C40 C C sing 1.54 N N
8 C43 N33 C N sing 1.47 N N
9 N33 C34 N C sing 1.48 N N
10 N33 C37 N C sing 1.48 N N
11 C34 C35 C C sing 1.54 N N
12 C35 C36 C C sing 1.55 N N
13 C36 C37 C C sing 1.55 N N
14 C40 C41 C C sing 1.55 N N
15 C41 C42 C C sing 1.55 N N
16 C23 C24 C C sing 1.41 N Y
17 C23 C22 C C doub 1.38 N Y
18 C24 C29 C C sing 1.51 N N
19 C24 C25 C C doub 1.38 N Y
20 C22 C28 C C sing 1.51 N N
21 C22 N26 C N sing 1.34 N Y
22 N26 C25 N C sing 1.38 N Y
23 C25 C C C sing 1.41 N N
24 C C21 C C doub 1.38 N N
25 C21 C20 C C sing 1.47 N N
26 C21 C17 C C sing 1.48 N N
27 C20 O32 C O doub 1.22 N N
28 C20 N19 C N sing 1.34 N N
29 N19 C18 N C sing 1.39 N N
30 C18 C9 C C doub 1.39 N Y
31 C18 C17 C C sing 1.4 N Y
32 C9 C8 C C sing 1.38 N Y
33 C8 C7 C C doub 1.38 N Y
34 C17 C10 C C doub 1.39 N Y
35 C10 C7 C C sing 1.38 N Y
36 C7 S11 C S sing 1.76 N N
37 S11 O12 S O doub 1.42 N N
38 S11 O13 S O doub 1.42 N N
39 S11 C14 S C sing 1.81 N N
40 C14 C1 C C sing 1.51 N N
41 C1 C6 C C sing 1.38 N Y
42 C1 C2 C C doub 1.38 N Y
43 C6 CL6 C CL sing 1.74 N N
44 C6 C5 C C doub 1.38 N Y
45 C2 CL5 C CL sing 1.74 N N
46 C2 C3 C C sing 1.38 N Y
47 C3 C4 C C doub 1.38 N Y
48 C4 C5 C C sing 1.38 Z Y
49 C39 H39 C H sing 1.09 N N
50 C42 H421 C H sing 1.09 N N
51 C42 H422 C H sing 1.09 N N
52 C43 H431 C H sing 1.09 N N
53 C43 H432 C H sing 1.09 N N
54 C40 H401 C H sing 1.09 N N
55 C40 H402 C H sing 1.09 N N
56 C34 H341 C H sing 1.09 N N
57 C34 H342 C H sing 1.09 N N
58 C37 H371 C H sing 1.09 N N
59 C37 H372 C H sing 1.09 N N
60 C35 H351 C H sing 1.09 N N
61 C35 H352 C H sing 1.09 N N
62 C36 H361 C H sing 1.09 N N
63 C36 H362 C H sing 1.09 N N
64 C41 H411 C H sing 1.09 N N
65 C41 H412 C H sing 1.09 N N
66 C29 H291 C H sing 1.09 N N
67 C29 H292 C H sing 1.09 N N
68 C29 H293 C H sing 1.09 N N
69 C28 H281 C H sing 1.09 N N
70 C28 H282 C H sing 1.09 N N
71 C28 H283 C H sing 1.09 N N
72 N26 H26 N H sing 0.97 N N
73 C H C H sing 1.08 N N
74 N19 H19 N H sing 0.97 N N
75 C9 H9 C H sing 1.08 N N
76 C8 H8 C H sing 1.08 N N
77 C10 H10 C H sing 1.08 N N
78 C14 H141 C H sing 1.09 N N
79 C14 H142 C H sing 1.09 N N
80 C5 H5 C H sing 1.08 N N
81 C3 H3 C H sing 1.08 N N
82 C4 H4 C H sing 1.08 N N