Services
Research
Training
Industry
About us
Protein Data Bank
in Europe
Bringing Structure to Biology
Chemical Components in the PDB
pdbe.org/chem
Feedback
Share
Summary
Atoms
Bonds
In PDB Entries
Names
Descriptors
Complete Listing
Modify Search
Download Links
Molfile:
Ideal
Representative
PDB:
Ideal
Representative
Other:
mmCif
CML
Related compounds
Could not find any related compound in the PDB.
3D-Views
Ideal
Representative
PDB Links
PDB entries
PDBeChem : Chemical Bonds
Molecule :
PGV
Bonds between two atoms of the molecule
Total Number of Bonds: 127
50
10 per page
20 per page
Show all
Record
First Atom
Second Atom
First Element
Second Element
Bond Order Type
Bond Length
Bond Stereochemistry
Is Aromatic
1
P
O11
P
O
sing
1.61
N
N
2
P
O12
P
O
sing
1.61
N
N
3
P
O13
P
O
doub
1.48
N
N
4
P
O14
P
O
sing
1.61
N
N
5
C01
C02
C
C
sing
1.53
N
N
6
C01
O03
C
O
sing
1.45
N
N
7
C01
H011
C
H
sing
1.09
N
N
8
C01
H012
C
H
sing
1.09
N
N
9
C02
C03
C
C
sing
1.53
N
N
10
C02
O01
C
O
sing
1.45
N
N
11
C02
H02
C
H
sing
1.09
N
N
12
C03
O11
C
O
sing
1.43
N
N
13
C03
H031
C
H
sing
1.09
N
N
14
C03
H032
C
H
sing
1.09
N
N
15
C04
C05
C
C
sing
1.53
N
N
16
C04
O12
C
O
sing
1.43
N
N
17
C04
H041
C
H
sing
1.09
N
N
18
C04
H042
C
H
sing
1.09
N
N
19
C05
C06
C
C
sing
1.53
N
N
20
C05
O05
C
O
sing
1.43
N
N
21
C05
H05
C
H
sing
1.09
N
N
22
C06
O06
C
O
sing
1.43
N
N
23
C06
H061
C
H
sing
1.09
N
N
24
C06
H062
C
H
sing
1.09
N
N
25
O01
C1
O
C
sing
1.34
N
N
26
O02
C1
O
C
doub
1.21
N
N
27
O03
C19
O
C
sing
1.34
N
N
28
O04
C19
O
C
doub
1.21
N
N
29
O05
H1
O
H
sing
0.97
N
N
30
O06
H06
O
H
sing
0.97
N
N
31
O14
H14
O
H
sing
0.97
N
N
32
C1
C2
C
C
sing
1.51
N
N
33
C2
C3
C
C
sing
1.53
N
N
34
C2
H21
C
H
sing
1.09
N
N
35
C2
H22
C
H
sing
1.09
N
N
36
C3
C4
C
C
sing
1.53
N
N
37
C3
H31
C
H
sing
1.09
N
N
38
C3
H32
C
H
sing
1.09
N
N
39
C4
C5
C
C
sing
1.53
N
N
40
C4
H41
C
H
sing
1.09
N
N
41
C4
H42
C
H
sing
1.09
N
N
42
C5
C6
C
C
sing
1.53
N
N
43
C5
H51
C
H
sing
1.09
N
N
44
C5
H52
C
H
sing
1.09
N
N
45
C6
C7
C
C
sing
1.53
N
N
46
C6
H61
C
H
sing
1.09
N
N
47
C6
H62
C
H
sing
1.09
N
N
48
C7
C8
C
C
sing
1.53
N
N
49
C7
H71
C
H
sing
1.09
N
N
50
C7
H72
C
H
sing
1.09
N
N
51
C8
C9
C
C
sing
1.53
N
N
52
C8
H81
C
H
sing
1.09
N
N
53
C8
H82
C
H
sing
1.09
N
N
54
C9
C10
C
C
sing
1.53
N
N
55
C9
H91
C
H
sing
1.09
N
N
56
C9
H92
C
H
sing
1.09
N
N
57
C10
C11
C
C
sing
1.51
N
N
58
C10
H101
C
H
sing
1.09
N
N
59
C10
H102
C
H
sing
1.09
N
N
60
C11
C12
C
C
doub
1.31
Z
N
61
C11
H11
C
H
sing
1.08
N
N
62
C12
C13
C
C
sing
1.51
N
N
63
C12
H12
C
H
sing
1.08
N
N
64
C13
C14
C
C
sing
1.53
N
N
65
C13
H131
C
H
sing
1.09
N
N
66
C13
H132
C
H
sing
1.09
N
N
67
C14
C15
C
C
sing
1.53
N
N
68
C14
H141
C
H
sing
1.09
N
N
69
C14
H142
C
H
sing
1.09
N
N
70
C15
C16
C
C
sing
1.53
N
N
71
C15
H151
C
H
sing
1.09
N
N
72
C15
H152
C
H
sing
1.09
N
N
73
C16
C17
C
C
sing
1.53
N
N
74
C16
H161
C
H
sing
1.09
N
N
75
C16
H162
C
H
sing
1.09
N
N
76
C17
C18
C
C
sing
1.53
N
N
77
C17
H171
C
H
sing
1.09
N
N
78
C17
H172
C
H
sing
1.09
N
N
79
C18
H181
C
H
sing
1.09
N
N
80
C18
H182
C
H
sing
1.09
N
N
81
C18
H183
C
H
sing
1.09
N
N
82
C19
C20
C
C
sing
1.51
N
N
83
C20
C21
C
C
sing
1.53
N
N
84
C20
H201
C
H
sing
1.09
N
N
85
C20
H202
C
H
sing
1.09
N
N
86
C21
C22
C
C
sing
1.53
N
N
87
C21
H211
C
H
sing
1.09
N
N
88
C21
H212
C
H
sing
1.09
N
N
89
C22
C23
C
C
sing
1.53
N
N
90
C22
H221
C
H
sing
1.09
N
N
91
C22
H222
C
H
sing
1.09
N
N
92
C23
C24
C
C
sing
1.53
N
N
93
C23
H231
C
H
sing
1.09
N
N
94
C23
H232
C
H
sing
1.09
N
N
95
C24
C25
C
C
sing
1.53
N
N
96
C24
H241
C
H
sing
1.09
N
N
97
C24
H242
C
H
sing
1.09
N
N
98
C25
C26
C
C
sing
1.53
N
N
99
C25
H251
C
H
sing
1.09
N
N
100
C25
H252
C
H
sing
1.09
N
N
101
C26
C27
C
C
sing
1.53
N
N
102
C26
H261
C
H
sing
1.09
N
N
103
C26
H262
C
H
sing
1.09
N
N
104
C27
C28
C
C
sing
1.53
N
N
105
C27
H271
C
H
sing
1.09
N
N
106
C27
H272
C
H
sing
1.09
N
N
107
C28
C29
C
C
sing
1.53
N
N
108
C28
H281
C
H
sing
1.09
N
N
109
C28
H282
C
H
sing
1.09
N
N
110
C29
C30
C
C
sing
1.53
N
N
111
C29
H291
C
H
sing
1.09
N
N
112
C29
H292
C
H
sing
1.09
N
N
113
C30
C31
C
C
sing
1.53
N
N
114
C30
H301
C
H
sing
1.09
N
N
115
C30
H302
C
H
sing
1.09
N
N
116
C31
C32
C
C
sing
1.53
N
N
117
C31
H311
C
H
sing
1.09
N
N
118
C31
H312
C
H
sing
1.09
N
N
119
C32
C33
C
C
sing
1.53
N
N
120
C32
H321
C
H
sing
1.09
N
N
121
C32
H322
C
H
sing
1.09
N
N
122
C33
C34
C
C
sing
1.53
N
N
123
C33
H331
C
H
sing
1.09
N
N
124
C33
H332
C
H
sing
1.09
N
N
125
C34
H341
C
H
sing
1.09
N
N
126
C34
H342
C
H
sing
1.09
N
N
127
C34
H343
C
H
sing
1.09
N
N