Chemical Components in the PDB

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PDBeChem : Chemical Bonds

 Molecule : PIR    

Bonds between two atoms of the molecule

Total Number of Bonds: 33


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 C1 C2 C C doub 1.38 N Y
2 C1 C6 C C sing 1.38 N Y
3 C1 H1 C H sing 1.08 N N
4 C2 C3 C C sing 1.38 N Y
5 C2 C1' C C sing 1.51 N N
6 C3 C4 C C doub 1.38 N Y
7 C3 H3 C H sing 1.08 N N
8 C4 C5 C C sing 1.39 N Y
9 C4 H4 C H sing 1.08 N N
10 C5 N5 C N sing 1.4 N N
11 C5 C6 C C doub 1.39 N Y
12 N5 HN51 N H sing 0.97 N N
13 N5 HN52 N H sing 0.97 N N
14 C6 H6 C H sing 1.08 N N
15 C1' C2' C C sing 1.54 N N
16 C1' N4' C N sing 1.49 N N
17 C1' H1' C H sing 1.09 N N
18 C2' O2' C O sing 1.43 N N
19 C2' C3' C C sing 1.54 N N
20 C2' H2' C H sing 1.09 N N
21 O2' HO2' O H sing 0.97 N N
22 C3' O3' C O sing 1.43 N N
23 C3' C4' C C sing 1.54 N N
24 C3' H3' C H sing 1.09 N N
25 O3' HO3' O H sing 0.97 N N
26 C4' N4' C N sing 1.49 N N
27 C4' C5' C C sing 1.53 N N
28 C4' H4' C H sing 1.09 N N
29 N4' HN4' N H sing 1.01 N N
30 C5' O5' C O sing 1.43 N N
31 C5' H5'1 C H sing 1.09 N N
32 C5' H5'2 C H sing 1.09 N N
33 O5' HO5' O H sing 0.97 N N