Chemical Components in the PDB

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PDBeChem : Chemical Bonds

 Molecule : PIZ    

Bonds between two atoms of the molecule

Total Number of Bonds: 149


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 O53 P5 O P doub 1.48 N N
2 O51 P5 O P sing 1.61 N N
3 P5 O52 P O sing 1.61 N N
4 P5 O5 P O sing 1.61 N N
5 CA2 CA3 C C sing 1.53 N N
6 CA2 CA1 C C sing 1.51 N N
7 OA1 CA1 O C sing 1.34 N N
8 OA1 C9 O C sing 1.45 N N
9 CA3 CA4 C C sing 1.53 N N
10 CA1 OA2 C O doub 1.21 N N
11 OB2 CB1 O C doub 1.21 N N
12 C9 C7 C C sing 1.53 N N
13 OB1 CB1 O C sing 1.34 N N
14 OB1 C7 O C sing 1.45 N N
15 O6 C6 O C sing 1.43 N N
16 O5 C5 O C sing 1.43 N N
17 CB1 CB2 C C sing 1.51 N N
18 CA4 CA5 C C sing 1.53 N N
19 C8 C7 C C sing 1.53 N N
20 C8 O13 C O sing 1.43 N N
21 CA5 CA6 C C sing 1.53 N N
22 CB2 CB3 C C sing 1.53 N N
23 C5 C6 C C sing 1.53 N N
24 C5 C4 C C sing 1.53 N N
25 C6 C1 C C sing 1.53 N N
26 O13 P1 O P sing 1.61 N N
27 O43 P4 O P doub 1.48 N N
28 CB3 CB4 C C sing 1.53 N N
29 CB4 CB5 C C sing 1.53 N N
30 CA6 CA7 C C sing 1.53 N N
31 CA7 CA8 C C sing 1.53 N N
32 O42 P4 O P sing 1.61 N N
33 CB5 CB6 C C sing 1.53 N N
34 O4 P4 O P sing 1.61 N N
35 O4 C4 O C sing 1.43 N N
36 P4 O41 P O sing 1.61 N N
37 C4 C3 C C sing 1.53 N N
38 C1 O1 C O sing 1.43 N N
39 C1 C2 C C sing 1.53 N N
40 O1 P1 O P sing 1.61 N N
41 P1 O12 P O doub 1.48 N N
42 P1 O11 P O sing 1.61 N N
43 CB6 CB7 C C sing 1.53 N N
44 CA9 CA8 C C sing 1.53 N N
45 CA9 CAA C C sing 1.53 N N
46 C3 C2 C C sing 1.53 N N
47 C3 O3 C O sing 1.43 N N
48 C2 O2 C O sing 1.43 N N
49 CB7 CB8 C C sing 1.53 N N
50 CAA CAB C C sing 1.53 N N
51 CAB CAC C C sing 1.53 N N
52 O33 P3 O P doub 1.48 N N
53 O3 P3 O P sing 1.61 N N
54 CB8 CB9 C C sing 1.53 N N
55 P3 O32 P O sing 1.61 N N
56 P3 O31 P O sing 1.61 N N
57 CAC CAD C C sing 1.53 N N
58 CB9 CBA C C sing 1.53 N N
59 CAD CAE C C sing 1.53 N N
60 CBB CBC C C sing 1.53 N N
61 CBB CBA C C sing 1.53 N N
62 CBC CBD C C sing 1.53 N N
63 CAE CAF C C sing 1.53 N N
64 CBE CBD C C sing 1.53 N N
65 CBE CBF C C sing 1.53 N N
66 CAF CAG C C sing 1.53 N N
67 CBF CBG C C sing 1.53 N N
68 CBG H1 C H sing 1.09 N N
69 CBG H2 C H sing 1.09 N N
70 CBG H3 C H sing 1.09 N N
71 CBF H4 C H sing 1.09 N N
72 CBF H5 C H sing 1.09 N N
73 CBE H6 C H sing 1.09 N N
74 CBE H7 C H sing 1.09 N N
75 CBD H8 C H sing 1.09 N N
76 CBD H9 C H sing 1.09 N N
77 CBC H10 C H sing 1.09 N N
78 CBC H11 C H sing 1.09 N N
79 CBB H12 C H sing 1.09 N N
80 CBB H13 C H sing 1.09 N N
81 CBA H14 C H sing 1.09 N N
82 CBA H15 C H sing 1.09 N N
83 CB9 H16 C H sing 1.09 N N
84 CB9 H17 C H sing 1.09 N N
85 CB8 H18 C H sing 1.09 N N
86 CB8 H19 C H sing 1.09 N N
87 CB7 H20 C H sing 1.09 N N
88 CB7 H21 C H sing 1.09 N N
89 CB6 H22 C H sing 1.09 N N
90 CB6 H23 C H sing 1.09 N N
91 CB5 H24 C H sing 1.09 N N
92 CB5 H25 C H sing 1.09 N N
93 CB4 H26 C H sing 1.09 N N
94 CB4 H27 C H sing 1.09 N N
95 CB3 H28 C H sing 1.09 N N
96 CB3 H29 C H sing 1.09 N N
97 CB2 H30 C H sing 1.09 N N
98 CB2 H31 C H sing 1.09 N N
99 C7 H32 C H sing 1.09 N N
100 C8 H33 C H sing 1.09 N N
101 C8 H34 C H sing 1.09 N N
102 O11 H35 O H sing 0.97 N N
103 C1 H36 C H sing 1.09 N N
104 C2 H37 C H sing 1.09 N N
105 O2 H38 O H sing 0.97 N N
106 C3 H39 C H sing 1.09 N N
107 O31 H40 O H sing 0.97 N N
108 O32 H41 O H sing 0.97 N N
109 C4 H42 C H sing 1.09 N N
110 O41 H43 O H sing 0.97 N N
111 O42 H44 O H sing 0.97 N N
112 C5 H45 C H sing 1.09 N N
113 O51 H46 O H sing 0.97 N N
114 O52 H47 O H sing 0.97 N N
115 C6 H48 C H sing 1.09 N N
116 O6 H49 O H sing 0.97 N N
117 C9 H50 C H sing 1.09 N N
118 C9 H51 C H sing 1.09 N N
119 CA2 H52 C H sing 1.09 N N
120 CA2 H53 C H sing 1.09 N N
121 CA3 H54 C H sing 1.09 N N
122 CA3 H55 C H sing 1.09 N N
123 CA4 H56 C H sing 1.09 N N
124 CA4 H57 C H sing 1.09 N N
125 CA5 H58 C H sing 1.09 N N
126 CA5 H59 C H sing 1.09 N N
127 CA6 H60 C H sing 1.09 N N
128 CA6 H61 C H sing 1.09 N N
129 CA7 H62 C H sing 1.09 N N
130 CA7 H63 C H sing 1.09 N N
131 CA8 H64 C H sing 1.09 N N
132 CA8 H65 C H sing 1.09 N N
133 CA9 H66 C H sing 1.09 N N
134 CA9 H67 C H sing 1.09 N N
135 CAA H68 C H sing 1.09 N N
136 CAA H69 C H sing 1.09 N N
137 CAB H70 C H sing 1.09 N N
138 CAB H71 C H sing 1.09 N N
139 CAC H72 C H sing 1.09 N N
140 CAC H73 C H sing 1.09 N N
141 CAD H74 C H sing 1.09 N N
142 CAD H75 C H sing 1.09 N N
143 CAE H76 C H sing 1.09 N N
144 CAE H77 C H sing 1.09 N N
145 CAF H78 C H sing 1.09 N N
146 CAF H79 C H sing 1.09 N N
147 CAG H80 C H sing 1.09 N N
148 CAG H81 C H sing 1.09 N N
149 CAG H82 C H sing 1.09 N N