Chemical Components in the PDB

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PDBeChem : Chemical Bonds

 Molecule : PMM    

Bonds between two atoms of the molecule

Total Number of Bonds: 27


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 N5 C6 N C doub 1.32 N Y
2 N5 C4A N C sing 1.33 N Y
3 C6 C7 C C sing 1.39 N Y
4 C6 C9 C C sing 1.51 N N
5 C7 N8 C N doub 1.32 N Y
6 C7 H7 C H sing 1.08 N N
7 N8 C8A N C sing 1.33 N Y
8 N1 C2 N C doub 1.31 N Y
9 N1 C8A N C sing 1.35 N Y
10 C2 N2 C N sing 1.37 N N
11 C2 N3 C N sing 1.36 N Y
12 N2 HN21 N H sing 0.97 N N
13 N2 HN22 N H sing 0.97 N N
14 N3 C4 N C sing 1.35 N Y
15 N3 HN3 N H sing 0.97 N N
16 C4 O4 C O doub 1.22 N N
17 C4 C4A C C sing 1.47 N Y
18 C4A C8A C C doub 1.41 N Y
19 C9 O10 C O sing 1.43 N N
20 C9 H91 C H sing 1.09 N N
21 C9 H92 C H sing 1.09 N N
22 O10 PA O P sing 1.61 N N
23 PA O1P P O doub 1.48 N N
24 PA O2P P O sing 1.61 N N
25 PA O3P P O sing 1.61 N N
26 O2P HOP2 O H sing 0.97 N N
27 O3P HOP3 O H sing 0.97 N N