Chemical Components in the PDB

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PDBeChem : Chemical Bonds

 Molecule : Q5S    

Bonds between two atoms of the molecule

Total Number of Bonds: 144


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 O54 C53 O C sing 1.43 N N
2 O56 C55 O C sing 1.43 N N
3 C53 C52 C C sing 1.53 N N
4 O58 C57 O C sing 1.43 N N
5 C55 C57 C C sing 1.53 N N
6 C55 C52 C C sing 1.53 N N
7 C57 C59 C C sing 1.53 N N
8 C52 O51 C O sing 1.43 N N
9 O51 C50 O C sing 1.43 N N
10 C59 C50 C C sing 1.53 N N
11 C59 N60 C N sing 1.47 N N
12 O63 C61 O C doub 1.21 N N
13 C50 O49 C O sing 1.43 N N
14 N60 C61 N C sing 1.35 N N
15 C61 C62 C C sing 1.51 N N
16 O49 P46 O P sing 1.61 N N
17 O44 P42 O P doub 1.48 N N
18 P46 O47 P O doub 1.48 N N
19 P46 O45 P O sing 1.61 N N
20 P46 O48 P O sing 1.61 N N
21 O45 P42 O P sing 1.61 N N
22 P42 O43 P O sing 1.61 N N
23 P42 O41 P O sing 1.61 N N
24 O41 C40 O C sing 1.43 N N
25 C40 C39 C C sing 1.51 N N
26 C39 C37 C C doub 1.31 Z N
27 C37 C38 C C sing 1.51 N N
28 C37 C36 C C sing 1.51 N N
29 C36 C35 C C sing 1.53 N N
30 C35 C34 C C sing 1.51 N N
31 C34 C32 C C doub 1.31 Z N
32 C31 C32 C C sing 1.51 N N
33 C31 C30 C C sing 1.53 N N
34 C32 C33 C C sing 1.51 N N
35 C30 C29 C C sing 1.51 N N
36 C29 C27 C C doub 1.31 Z N
37 C27 C28 C C sing 1.51 N N
38 C27 C26 C C sing 1.51 N N
39 C26 C25 C C sing 1.53 N N
40 C25 C24 C C sing 1.51 N N
41 C24 C22 C C doub 1.31 Z N
42 C22 C23 C C sing 1.51 N N
43 C22 C21 C C sing 1.51 N N
44 C21 C20 C C sing 1.53 N N
45 C20 C19 C C sing 1.51 N N
46 C19 C17 C C doub 1.31 Z N
47 C17 C18 C C sing 1.51 N N
48 C17 C16 C C sing 1.51 N N
49 C16 C15 C C sing 1.53 N N
50 C01 C02 C C sing 1.51 N N
51 C15 C14 C C sing 1.51 N N
52 C14 C12 C C doub 1.31 Z N
53 C02 C03 C C sing 1.51 N N
54 C02 C04 C C doub 1.31 N N
55 C05 C04 C C sing 1.51 N N
56 C05 C06 C C sing 1.53 N N
57 C06 C07 C C sing 1.51 N N
58 C12 C11 C C sing 1.51 N N
59 C12 C13 C C sing 1.51 N N
60 C11 C10 C C sing 1.53 N N
61 C10 C09 C C sing 1.51 N N
62 C07 C09 C C doub 1.31 Z N
63 C07 C08 C C sing 1.51 N N
64 C10 H1 C H sing 1.09 N N
65 C10 H2 C H sing 1.09 N N
66 C01 H3 C H sing 1.09 N N
67 C01 H4 C H sing 1.09 N N
68 C01 H5 C H sing 1.09 N N
69 C03 H6 C H sing 1.09 N N
70 C03 H7 C H sing 1.09 N N
71 C03 H8 C H sing 1.09 N N
72 C04 H9 C H sing 1.08 N N
73 C05 H10 C H sing 1.09 N N
74 C05 H11 C H sing 1.09 N N
75 C06 H12 C H sing 1.09 N N
76 C06 H13 C H sing 1.09 N N
77 C08 H14 C H sing 1.09 N N
78 C08 H15 C H sing 1.09 N N
79 C08 H16 C H sing 1.09 N N
80 C09 H17 C H sing 1.08 N N
81 C11 H18 C H sing 1.09 N N
82 C11 H19 C H sing 1.09 N N
83 C13 H20 C H sing 1.09 N N
84 C13 H21 C H sing 1.09 N N
85 C13 H22 C H sing 1.09 N N
86 C14 H23 C H sing 1.08 N N
87 C15 H24 C H sing 1.09 N N
88 C15 H25 C H sing 1.09 N N
89 C16 H26 C H sing 1.09 N N
90 C16 H27 C H sing 1.09 N N
91 C18 H28 C H sing 1.09 N N
92 C18 H29 C H sing 1.09 N N
93 C18 H30 C H sing 1.09 N N
94 C19 H31 C H sing 1.08 N N
95 C20 H32 C H sing 1.09 N N
96 C20 H33 C H sing 1.09 N N
97 C21 H34 C H sing 1.09 N N
98 C21 H35 C H sing 1.09 N N
99 C23 H36 C H sing 1.09 N N
100 C23 H37 C H sing 1.09 N N
101 C23 H38 C H sing 1.09 N N
102 C24 H39 C H sing 1.08 N N
103 C25 H40 C H sing 1.09 N N
104 C25 H41 C H sing 1.09 N N
105 C26 H42 C H sing 1.09 N N
106 C26 H43 C H sing 1.09 N N
107 C28 H44 C H sing 1.09 N N
108 C28 H45 C H sing 1.09 N N
109 C28 H46 C H sing 1.09 N N
110 C29 H47 C H sing 1.08 N N
111 C30 H48 C H sing 1.09 N N
112 C30 H49 C H sing 1.09 N N
113 C31 H50 C H sing 1.09 N N
114 C31 H51 C H sing 1.09 N N
115 C33 H52 C H sing 1.09 N N
116 C33 H53 C H sing 1.09 N N
117 C33 H54 C H sing 1.09 N N
118 C34 H55 C H sing 1.08 N N
119 C35 H56 C H sing 1.09 N N
120 C35 H57 C H sing 1.09 N N
121 C36 H58 C H sing 1.09 N N
122 C36 H59 C H sing 1.09 N N
123 C38 H60 C H sing 1.09 N N
124 C38 H61 C H sing 1.09 N N
125 C38 H62 C H sing 1.09 N N
126 C39 H63 C H sing 1.08 N N
127 C40 H64 C H sing 1.09 N N
128 C40 H65 C H sing 1.09 N N
129 C50 H66 C H sing 1.09 N N
130 C52 H67 C H sing 1.09 N N
131 C53 H68 C H sing 1.09 N N
132 C53 H69 C H sing 1.09 N N
133 C55 H70 C H sing 1.09 N N
134 C57 H71 C H sing 1.09 N N
135 C59 H72 C H sing 1.09 N N
136 C62 H73 C H sing 1.09 N N
137 C62 H74 C H sing 1.09 N N
138 C62 H75 C H sing 1.09 N N
139 N60 H76 N H sing 0.97 N N
140 O43 H77 O H sing 0.97 N N
141 O48 H78 O H sing 0.97 N N
142 O54 H79 O H sing 0.97 N N
143 O56 H80 O H sing 0.97 N N
144 O58 H81 O H sing 0.97 N N