Chemical Components in the PDB

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PDBeChem : Chemical Bonds

 Molecule : QDY    

Bonds between two atoms of the molecule

Total Number of Bonds: 83


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 C18 C17 C C doub 1.38 N Y
2 C18 C19 C C sing 1.38 N Y
3 N27 C28 N C doub 1.32 N Y
4 N27 C26 N C sing 1.32 N Y
5 C17 C16 C C sing 1.38 N Y
6 C19 C14 C C doub 1.38 N Y
7 C16 C15 C C doub 1.38 N Y
8 C14 C15 C C sing 1.38 N Y
9 C14 C13 C C sing 1.51 N N
10 C28 C29 C C sing 1.38 N Y
11 C13 C12 C C sing 1.53 N N
12 C26 C25 C C doub 1.38 N Y
13 O21 C20 O C doub 1.21 N N
14 C29 C30 C C doub 1.39 N Y
15 C12 C20 C C sing 1.51 N N
16 C12 S11 C S sing 1.81 N N
17 C20 N22 C N sing 1.35 N N
18 C25 C30 C C sing 1.39 N Y
19 C25 C24 C C sing 1.51 N N
20 S11 C10 S C sing 1.81 N N
21 C24 C23 C C sing 1.53 N N
22 N22 C23 N C sing 1.46 N N
23 C03 C02 C C sing 1.53 N N
24 C10 C09 C C sing 1.53 N N
25 C02 C04 C C sing 1.53 N N
26 C02 C01 C C sing 1.53 N N
27 C02 O05 C O sing 1.45 N N
28 O07 C06 O C doub 1.22 N N
29 C06 N08 C N sing 1.35 N N
30 C06 O05 C O sing 1.35 N N
31 C09 N08 C N sing 1.46 N N
32 C09 C31 C C sing 1.53 N N
33 C31 C32 C C sing 1.51 N N
34 C41 C32 C C doub 1.36 N Y
35 C41 C40 C C sing 1.39 N Y
36 C32 C33 C C sing 1.41 N Y
37 C40 C39 C C doub 1.36 N Y
38 C33 C34 C C doub 1.41 N Y
39 C33 C38 C C sing 1.42 N Y
40 C39 C38 C C sing 1.41 N Y
41 C34 C35 C C sing 1.36 N Y
42 C38 C37 C C doub 1.4 N Y
43 C35 C36 C C doub 1.39 N Y
44 C37 C36 C C sing 1.36 N Y
45 C10 H1 C H sing 1.09 N N
46 C10 H2 C H sing 1.09 N N
47 C12 H3 C H sing 1.09 N N
48 C13 H4 C H sing 1.09 N N
49 C13 H5 C H sing 1.09 N N
50 C15 H6 C H sing 1.08 N N
51 C16 H7 C H sing 1.08 N N
52 C17 H8 C H sing 1.08 N N
53 C18 H9 C H sing 1.08 N N
54 C19 H10 C H sing 1.08 N N
55 C01 H11 C H sing 1.09 N N
56 C01 H12 C H sing 1.09 N N
57 C01 H13 C H sing 1.09 N N
58 C03 H14 C H sing 1.09 N N
59 C03 H15 C H sing 1.09 N N
60 C03 H16 C H sing 1.09 N N
61 C04 H17 C H sing 1.09 N N
62 C04 H18 C H sing 1.09 N N
63 C04 H19 C H sing 1.09 N N
64 C09 H20 C H sing 1.09 N N
65 C23 H21 C H sing 1.09 N N
66 C23 H22 C H sing 1.09 N N
67 C24 H23 C H sing 1.09 N N
68 C24 H24 C H sing 1.09 N N
69 C26 H25 C H sing 1.08 N N
70 C28 H26 C H sing 1.08 N N
71 C29 H27 C H sing 1.08 N N
72 C30 H28 C H sing 1.08 N N
73 C31 H29 C H sing 1.09 N N
74 C31 H30 C H sing 1.09 N N
75 C34 H31 C H sing 1.08 N N
76 C35 H32 C H sing 1.08 N N
77 C36 H33 C H sing 1.08 N N
78 C37 H34 C H sing 1.08 N N
79 C39 H35 C H sing 1.08 N N
80 C40 H36 C H sing 1.08 N N
81 C41 H37 C H sing 1.08 N N
82 N08 H38 N H sing 0.97 N N
83 N22 H39 N H sing 0.97 N N