Chemical Components in the PDB

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PDBeChem : Chemical Bonds

 Molecule : QRZ    

Bonds between two atoms of the molecule

Total Number of Bonds: 39


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 S4 C3 S C doub 1.71 N N
2 N5 C3 N C sing 1.35 N N
3 C3 C6 C C sing 1.48 N N
4 C5 C6 C C doub 1.36 N N
5 C5 C4 C C sing 1.42 N N
6 C6 N1 C N sing 1.38 N N
7 O4 C4 O C doub 1.22 N N
8 C4 N3 C N sing 1.35 N N
9 N1 C1' N C sing 1.47 N N
10 N1 C2 N C sing 1.35 N N
11 C1' O4' C O sing 1.44 N N
12 C1' C2' C C sing 1.54 N N
13 O4' C4' O C sing 1.44 N N
14 N3 C2 N C sing 1.35 N N
15 O2' C2' O C sing 1.43 N N
16 C2 O2 C O doub 1.22 N N
17 O3' C3' O C sing 1.43 N N
18 C2' C3' C C sing 1.55 N N
19 C4' C3' C C sing 1.55 N N
20 C4' C5' C C sing 1.53 N N
21 C5' O5' C O sing 1.43 N N
22 O5' P O P sing 1.61 N N
23 O1P P O P doub 1.48 N N
24 P O3P P O sing 1.61 N N
25 P O2P P O sing 1.61 N N
26 O3P H1 O H sing 0.97 N N
27 O2P H2 O H sing 0.97 N N
28 C5' H3 C H sing 1.09 N N
29 C5' H4 C H sing 1.09 N N
30 C4' H5 C H sing 1.09 N N
31 C3' H6 C H sing 1.09 N N
32 O3' H7 O H sing 0.97 N N
33 C2' H8 C H sing 1.09 N N
34 O2' H9 O H sing 0.97 N N
35 C1' H10 C H sing 1.09 N N
36 C5 H11 C H sing 1.08 N N
37 N3 H12 N H sing 0.97 N N
38 N5 H13 N H sing 0.97 N N
39 N5 H14 N H sing 0.97 N N