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PDBeChem : Chemical Bonds
Molecule :
RPL
Bonds between two atoms of the molecule
Total Number of Bonds: 53
50
10 per page
20 per page
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Record
First Atom
Second Atom
First Element
Second Element
Bond Order Type
Bond Length
Bond Stereochemistry
Is Aromatic
1
O1P
P
O
P
doub
1.48
N
N
2
O2P
P
O
P
sing
1.61
N
N
3
O2P
HO2P
O
H
sing
0.97
N
N
4
O3P
P
O
P
sing
1.61
N
N
5
O3P
HO3P
O
H
sing
0.97
N
N
6
P
O5'
P
O
sing
1.61
N
N
7
O5'
C5'
O
C
sing
1.43
N
N
8
C5'
C4'
C
C
sing
1.53
N
N
9
C5'
H5'1
C
H
sing
1.09
N
N
10
C5'
H5'2
C
H
sing
1.09
N
N
11
C4'
O4'
C
O
sing
1.44
N
N
12
C4'
C3'
C
C
sing
1.55
N
N
13
C4'
H4
C
H
sing
1.09
N
N
14
O4'
C1'
O
C
sing
1.42
N
N
15
C3'
O3'
C
O
sing
1.43
N
N
16
C3'
C2'
C
C
sing
1.55
N
N
17
C3'
H3
C
H
sing
1.09
N
N
18
O3'
HO3'
O
H
sing
0.97
N
N
19
C2'
O2'
C
O
sing
1.43
N
N
20
C2'
C1'
C
C
sing
1.54
N
N
21
C2'
H2
C
H
sing
1.09
N
N
22
O2'
HO2'
O
H
sing
0.97
N
N
23
C1'
N1
C
N
sing
1.47
N
N
24
C1'
C4
C
C
sing
1.51
N
N
25
N1
C2
N
C
sing
1.35
N
N
26
N1
HN1
N
H
sing
0.97
N
N
27
C2
O2
C
O
doub
1.22
N
N
28
C2
N3
C
N
sing
1.34
N
N
29
N3
C4
N
C
sing
1.35
N
N
30
N3
C5A
N
C
sing
1.46
N
N
31
C4
O4
C
O
doub
1.21
N
N
32
C5A
C6A
C
C
sing
1.53
N
N
33
C5A
H51
C
H
sing
1.09
N
N
34
C5A
H52
C
H
sing
1.09
N
N
35
C6A
C7A
C
C
sing
1.53
N
N
36
C6A
H61
C
H
sing
1.09
N
N
37
C6A
H62
C
H
sing
1.09
N
N
38
C7A
C8A
C
C
sing
1.53
N
N
39
C7A
H71
C
H
sing
1.09
N
N
40
C7A
H72
C
H
sing
1.09
N
N
41
C8A
C9A
C
C
sing
1.51
N
N
42
C8A
NAA
C
N
sing
1.47
N
N
43
C8A
H81
C
H
sing
1.09
N
N
44
C9A
OJA
C
O
sing
1.34
N
N
45
C9A
OKA
C
O
doub
1.21
N
N
46
OJA
H91
O
H
sing
0.97
N
N
47
NAA
OAA
N
O
sing
1.46
N
N
48
NAA
CBA
N
C
sing
1.47
N
N
49
OAA
H10
O
H
sing
0.97
N
N
50
CBA
OBA
C
O
sing
1.43
N
N
51
CBA
H111
C
H
sing
1.09
N
N
52
CBA
H112
C
H
sing
1.09
N
N
53
OBA
H11
O
H
sing
0.97
N
N