Chemical Components in the PDB

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PDBeChem : Chemical Bonds

 Molecule : RPL    

Bonds between two atoms of the molecule

Total Number of Bonds: 53


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 O1P P O P doub 1.48 N N
2 O2P P O P sing 1.61 N N
3 O2P HO2P O H sing 0.97 N N
4 O3P P O P sing 1.61 N N
5 O3P HO3P O H sing 0.97 N N
6 P O5' P O sing 1.61 N N
7 O5' C5' O C sing 1.43 N N
8 C5' C4' C C sing 1.53 N N
9 C5' H5'1 C H sing 1.09 N N
10 C5' H5'2 C H sing 1.09 N N
11 C4' O4' C O sing 1.44 N N
12 C4' C3' C C sing 1.55 N N
13 C4' H4 C H sing 1.09 N N
14 O4' C1' O C sing 1.42 N N
15 C3' O3' C O sing 1.43 N N
16 C3' C2' C C sing 1.55 N N
17 C3' H3 C H sing 1.09 N N
18 O3' HO3' O H sing 0.97 N N
19 C2' O2' C O sing 1.43 N N
20 C2' C1' C C sing 1.54 N N
21 C2' H2 C H sing 1.09 N N
22 O2' HO2' O H sing 0.97 N N
23 C1' N1 C N sing 1.47 N N
24 C1' C4 C C sing 1.51 N N
25 N1 C2 N C sing 1.35 N N
26 N1 HN1 N H sing 0.97 N N
27 C2 O2 C O doub 1.22 N N
28 C2 N3 C N sing 1.34 N N
29 N3 C4 N C sing 1.35 N N
30 N3 C5A N C sing 1.46 N N
31 C4 O4 C O doub 1.21 N N
32 C5A C6A C C sing 1.53 N N
33 C5A H51 C H sing 1.09 N N
34 C5A H52 C H sing 1.09 N N
35 C6A C7A C C sing 1.53 N N
36 C6A H61 C H sing 1.09 N N
37 C6A H62 C H sing 1.09 N N
38 C7A C8A C C sing 1.53 N N
39 C7A H71 C H sing 1.09 N N
40 C7A H72 C H sing 1.09 N N
41 C8A C9A C C sing 1.51 N N
42 C8A NAA C N sing 1.47 N N
43 C8A H81 C H sing 1.09 N N
44 C9A OJA C O sing 1.34 N N
45 C9A OKA C O doub 1.21 N N
46 OJA H91 O H sing 0.97 N N
47 NAA OAA N O sing 1.46 N N
48 NAA CBA N C sing 1.47 N N
49 OAA H10 O H sing 0.97 N N
50 CBA OBA C O sing 1.43 N N
51 CBA H111 C H sing 1.09 N N
52 CBA H112 C H sing 1.09 N N
53 OBA H11 O H sing 0.97 N N