Chemical Components in the PDB

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PDBeChem : Chemical Bonds

 Molecule : RX3    

Bonds between two atoms of the molecule

Total Number of Bonds: 84


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 OXT C24 O C sing 1.35 N N
2 OXT HOXT O H sing 0.98 N N
3 C24 O6 C O doub 1.23 N N
4 C24 C23 C C sing 1.52 N N
5 C23 C25 C C sing 1.53 N N
6 C23 N2 C N sing 1.45 N N
7 C23 H23 C H sing 1.1 N N
8 C25 C26 C C sing 1.51 N N
9 C25 H251 C H sing 1.1 N N
10 C25 H252 C H sing 1.1 N N
11 C26 C27 C C doub 1.36 N Y
12 C26 C28 C C sing 1.4 N Y
13 C28 C29 C C sing 1.4 N Y
14 C28 C30 C C doub 1.41 N Y
15 C30 C32 C C sing 1.4 N Y
16 C30 H30 C H sing 1.09 N N
17 C32 C33 C C doub 1.39 N Y
18 C32 H32 C H sing 1.09 N N
19 C33 C31 C C sing 1.4 N Y
20 C33 H33 C H sing 1.09 N N
21 C31 C29 C C doub 1.4 N Y
22 C31 H31 C H sing 1.08 N N
23 C29 N3 C N sing 1.38 N Y
24 N3 C27 N C sing 1.37 N Y
25 N3 HN3 N H sing 1.01 N N
26 C27 H27 C H sing 1.08 N N
27 N2 C19 N C sing 1.38 N N
28 N2 HN2 N H sing 1.02 N N
29 C19 O5 C O doub 1.23 N N
30 C19 C18 C C sing 1.5 N N
31 C18 C20 C C sing 1.53 N N
32 C18 C17 C C sing 1.54 N N
33 C18 H18 C H sing 1.09 N N
34 C20 C21 C C sing 1.52 N N
35 C20 H201 C H sing 1.1 N N
36 C20 H202 C H sing 1.09 N N
37 C21 C22 C C sing 1.52 N N
38 C21 H211 C H sing 1.1 N N
39 C21 H212 C H sing 1.09 N N
40 C22 C17 C C sing 1.53 N N
41 C22 H221 C H sing 1.09 N N
42 C22 H222 C H sing 1.1 N N
43 C17 P1 C P sing 1.81 N N
44 C17 H17 C H sing 1.1 N N
45 P1 O3 P O doub 1.5 N N
46 P1 O4 P O sing 1.62 N N
47 P1 C9 P C sing 1.79 N N
48 O4 HO4 O H sing 0.98 N N
49 C9 C10 C C sing 1.53 N N
50 C9 N1 C N sing 1.46 N N
51 C9 H9 C H sing 1.1 N N
52 C10 C11 C C sing 1.51 N N
53 C10 H101 C H sing 1.1 N N
54 C10 H102 C H sing 1.1 N N
55 C11 C12 C C doub 1.39 N Y
56 C11 C13 C C sing 1.39 N Y
57 C13 C15 C C doub 1.4 N Y
58 C13 H13 C H sing 1.09 N N
59 C15 C16 C C sing 1.4 N Y
60 C15 H15 C H sing 1.09 N N
61 C16 C14 C C doub 1.39 N Y
62 C16 H16 C H sing 1.09 N N
63 C14 C12 C C sing 1.4 N Y
64 C14 H14 C H sing 1.09 N N
65 C12 H12 C H sing 1.09 N N
66 N1 C1 N C sing 1.38 N N
67 N1 HN1 N H sing 1.02 N N
68 C1 O2 C O doub 1.23 N N
69 C1 O1 C O sing 1.37 N N
70 O1 C2 O C sing 1.43 N N
71 C2 C3 C C sing 1.5 N N
72 C2 H21 C H sing 1.1 N N
73 C2 H22 C H sing 1.1 N N
74 C3 C4 C C sing 1.39 N Y
75 C3 C5 C C doub 1.39 N Y
76 C4 C6 C C doub 1.4 N Y
77 C4 H4 C H sing 1.09 N N
78 C5 C7 C C sing 1.4 N Y
79 C5 H5 C H sing 1.09 N N
80 C7 C8 C C doub 1.4 N Y
81 C7 H7 C H sing 1.09 N N
82 C8 C6 C C sing 1.4 N Y
83 C8 H8 C H sing 1.09 N N
84 C6 H6 C H sing 1.09 N N