Chemical Components in the PDB

pdbe.org/chem
wwPDB
EMDataBank
spacer

PDBeChem : Chemical Bonds

 Molecule : S09    

Bonds between two atoms of the molecule

Total Number of Bonds: 56


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 C09 C08 C C doub 1.38 N Y
2 C09 C10 C C sing 1.38 N Y
3 C08 C06 C C sing 1.39 N Y
4 C10 C11 C C doub 1.38 N Y
5 C06 O07 C O sing 1.36 N N
6 C06 C05 C C doub 1.39 N Y
7 C11 C05 C C sing 1.38 N Y
8 C11 C12 C C sing 1.51 N N
9 C05 C04 C C sing 1.51 N N
10 C12 C03 C C sing 1.54 N N
11 C12 N13 C N sing 1.46 N N
12 C03 C04 C C sing 1.54 N N
13 C03 C02 C C sing 1.51 N N
14 O31 C14 O C doub 1.22 N N
15 C14 N13 C N sing 1.35 N N
16 C14 C15 C C sing 1.48 N N
17 O32 C02 O C doub 1.21 N N
18 C02 O01 C O sing 1.34 N N
19 C15 C16 C C doub 1.4 N Y
20 C15 C30 C C sing 1.4 N Y
21 C16 C17 C C sing 1.38 N Y
22 C30 C29 C C doub 1.38 N Y
23 C17 C18 C C doub 1.39 N Y
24 C29 C18 C C sing 1.39 N Y
25 C18 N19 C N sing 1.39 N N
26 O28 C20 O C doub 1.22 N N
27 N19 C20 N C sing 1.35 N N
28 C20 N21 C N sing 1.35 N N
29 N21 C22 N C sing 1.4 N N
30 C23 C22 C C doub 1.39 N Y
31 C23 C24 C C sing 1.38 N Y
32 C22 C27 C C sing 1.39 N Y
33 C24 C25 C C doub 1.38 N Y
34 C27 C26 C C doub 1.38 N Y
35 C25 C26 C C sing 1.38 N Y
36 C16 H161 C H sing 1.08 N N
37 C17 H171 C H sing 1.08 N N
38 C12 H121 C H sing 1.09 N N
39 C10 H101 C H sing 1.08 N N
40 C03 H031 C H sing 1.09 N N
41 C04 H042 C H sing 1.09 N N
42 C04 H041 C H sing 1.09 N N
43 C08 H081 C H sing 1.08 N N
44 C09 H091 C H sing 1.08 N N
45 C23 H231 C H sing 1.08 N N
46 C24 H241 C H sing 1.08 N N
47 C25 H251 C H sing 1.08 N N
48 C26 H261 C H sing 1.08 N N
49 C27 H271 C H sing 1.08 N N
50 C29 H291 C H sing 1.08 N N
51 C30 H301 C H sing 1.08 N N
52 N13 H131 N H sing 0.97 N N
53 N19 H191 N H sing 0.97 N N
54 N21 H211 N H sing 0.97 N N
55 O01 H1 O H sing 0.97 N N
56 O07 H071 O H sing 0.97 N N