Chemical Components in the PDB

pdbe.org/chem
wwPDB
EMDataBank
spacer

PDBeChem : Chemical Bonds

 Molecule : S9D    

Bonds between two atoms of the molecule

Total Number of Bonds: 34


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 C12 N13 C N sing 1.48 N N
2 C12 C11 C C sing 1.54 N N
3 N13 N14 N N sing 1.47 N N
4 C11 C10 C C sing 1.55 N N
5 N14 C10 N C sing 1.49 N N
6 C10 C09 C C sing 1.51 N N
7 C09 C08 C C doub 1.38 N Y
8 C09 C15 C C sing 1.38 N Y
9 C08 C07 C C sing 1.38 N Y
10 C15 C16 C C doub 1.38 N Y
11 C07 C06 C C doub 1.39 N Y
12 C16 C06 C C sing 1.39 N Y
13 C06 O05 C O sing 1.36 N N
14 N03 C02 N C doub 1.32 N Y
15 N03 C04 N C sing 1.32 N Y
16 O05 C04 O C sing 1.36 N N
17 C02 C01 C C sing 1.39 N Y
18 C04 N17 C N doub 1.32 N Y
19 C01 C18 C C doub 1.39 N Y
20 N17 C18 N C sing 1.32 N Y
21 C10 H1 C H sing 1.09 N N
22 C15 H2 C H sing 1.08 N N
23 C01 H3 C H sing 1.08 N N
24 C02 H4 C H sing 1.08 N N
25 C07 H5 C H sing 1.08 N N
26 C08 H6 C H sing 1.08 N N
27 C11 H7 C H sing 1.09 N N
28 C11 H8 C H sing 1.09 N N
29 C12 H9 C H sing 1.09 N N
30 C12 H10 C H sing 1.09 N N
31 C16 H11 C H sing 1.08 N N
32 C18 H12 C H sing 1.08 N N
33 N13 H13 N H sing 1.01 N N
34 N14 H14 N H sing 1.01 N N