Chemical Components in the PDB

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PDBeChem : Chemical Bonds

 Molecule : SGP    

Bonds between two atoms of the molecule

Total Number of Bonds: 38


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 P S1P P S doub 1.86 N N
2 P O1P P O sing 1.61 N N
3 P O3' P O sing 1.63 N N
4 P O2' P O sing 1.63 N N
5 O1P HOP1 O H sing 0.97 N N
6 O5' C5' O C sing 1.43 N N
7 O5' HO5' O H sing 0.97 N N
8 C5' C4' C C sing 1.53 N N
9 C5' H5'1 C H sing 1.09 N N
10 C5' H5'2 C H sing 1.09 N N
11 C4' O4' C O sing 1.44 N N
12 C4' C3' C C sing 1.54 N N
13 C4' H4' C H sing 1.09 N N
14 O4' C1' O C sing 1.44 N N
15 C3' O3' C O sing 1.45 N N
16 C3' C2' C C sing 1.55 N N
17 C3' H3' C H sing 1.09 N N
18 C2' O2' C O sing 1.44 N N
19 C2' C1' C C sing 1.55 N N
20 C2' H2' C H sing 1.09 N N
21 C1' N9 C N sing 1.46 N N
22 C1' H1' C H sing 1.09 N N
23 N9 C8 N C sing 1.37 N Y
24 N9 C4 N C sing 1.37 N Y
25 C8 N7 C N doub 1.3 N Y
26 C8 H8 C H sing 1.08 N N
27 N7 C5 N C sing 1.36 N Y
28 C5 C6 C C sing 1.41 N N
29 C5 C4 C C doub 1.4 N Y
30 C6 O6 C O doub 1.22 N N
31 C6 N1 C N sing 1.35 N N
32 N1 C2 N C sing 1.36 N N
33 N1 HN1 N H sing 0.97 N N
34 C2 N2 C N sing 1.37 N N
35 C2 N3 C N doub 1.31 N N
36 N2 HN21 N H sing 0.97 N N
37 N2 HN22 N H sing 0.97 N N
38 N3 C4 N C sing 1.34 N N