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PDBeChem : Chemical Bonds
Molecule :
SMT
Bonds between two atoms of the molecule
Total Number of Bonds: 48
50
10 per page
20 per page
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Record
First Atom
Second Atom
First Element
Second Element
Bond Order Type
Bond Length
Bond Stereochemistry
Is Aromatic
1
P
OP1
P
O
doub
1.48
N
N
2
P
OP2
P
O
sing
1.61
N
N
3
P
OP3
P
O
sing
1.61
N
N
4
P
O5'
P
O
sing
1.61
N
N
5
OP2
H2P
O
H
sing
0.97
N
N
6
OP3
H3P
O
H
sing
0.97
N
N
7
O5'
C5'
O
C
sing
1.43
N
N
8
C5'
C4'
C
C
sing
1.53
N
N
9
C5'
H5'
C
H
sing
1.09
N
N
10
C5'
H5'2
C
H
sing
1.09
N
N
11
C4'
O4'
C
O
sing
1.44
N
N
12
C4'
C3'
C
C
sing
1.54
N
N
13
C4'
H4'
C
H
sing
1.09
N
N
14
O4'
C1'
O
C
sing
1.44
N
N
15
C3'
O3'
C
O
sing
1.43
N
N
16
C3'
C2'
C
C
sing
1.55
N
N
17
C3'
H3'
C
H
sing
1.09
N
N
18
O3'
HO3
O
H
sing
0.97
N
N
19
C2'
O2'
C
O
sing
1.43
N
N
20
C2'
C1'
C
C
sing
1.55
N
N
21
C2'
H2'
C
H
sing
1.09
N
N
22
O2'
CA'
O
C
sing
1.43
N
N
23
C1'
N1
C
N
sing
1.47
N
N
24
C1'
H1'
C
H
sing
1.09
N
N
25
N1
C2
N
C
sing
1.34
N
N
26
N1
C6
N
C
sing
1.37
N
N
27
C2
O2
C
O
doub
1.22
N
N
28
C2
N3
C
N
sing
1.35
N
N
29
N3
C4
N
C
sing
1.35
N
N
30
N3
H3
N
H
sing
0.97
N
N
31
C4
O4
C
O
doub
1.22
N
N
32
C4
C5
C
C
sing
1.42
N
N
33
C5
C5A
C
C
sing
1.51
N
N
34
C5
C6
C
C
doub
1.35
N
N
35
C5A
H5A
C
H
sing
1.09
N
N
36
C5A
H5A1
C
H
sing
1.09
N
N
37
C5A
H5A2
C
H
sing
1.09
N
N
38
C6
H6
C
H
sing
1.08
N
N
39
CA'
CB
C
C
sing
1.53
N
N
40
CA'
HA1
C
H
sing
1.09
N
N
41
CA'
HA2
C
H
sing
1.09
N
N
42
CB
SC
C
S
sing
1.81
N
N
43
CB
HB1
C
H
sing
1.09
N
N
44
CB
HB2
C
H
sing
1.09
N
N
45
SC
CD
S
C
sing
1.81
N
N
46
CD
HD1
C
H
sing
1.09
N
N
47
CD
HD2
C
H
sing
1.09
N
N
48
CD
HD3
C
H
sing
1.09
N
N