Chemical Components in the PDB

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PDBeChem : Chemical Bonds

 Molecule : SPO    

Bonds between two atoms of the molecule

Total Number of Bonds: 101


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 CM1 O1 C O sing 1.43 N N
2 CM1 HM11 C H sing 1.09 N N
3 CM1 HM12 C H sing 1.09 N N
4 CM1 HM13 C H sing 1.09 N N
5 O1 C1 O C sing 1.43 N N
6 C1 C2 C C sing 1.53 N N
7 C1 C3 C C sing 1.53 N N
8 C1 C4 C C sing 1.53 N N
9 C2 H21A C H sing 1.09 N N
10 C2 H22A C H sing 1.09 N N
11 C2 H23 C H sing 1.09 N N
12 C3 H31 C H sing 1.09 N N
13 C3 H32A C H sing 1.09 N N
14 C3 H33 C H sing 1.09 N N
15 C4 C5 C C sing 1.51 N N
16 C4 H41 C H sing 1.09 N N
17 C4 H42 C H sing 1.09 N N
18 C5 C6 C C doub 1.34 E N
19 C5 H5 C H sing 1.08 N N
20 C6 C7 C C sing 1.42 N N
21 C6 H6 C H sing 1.08 N N
22 C7 C8 C C sing 1.51 N N
23 C7 C9 C C doub 1.36 E N
24 C8 H81 C H sing 1.09 N N
25 C8 H82 C H sing 1.09 N N
26 C8 H83 C H sing 1.09 N N
27 C9 C10 C C sing 1.41 N N
28 C9 H9 C H sing 1.08 N N
29 C10 C11 C C doub 1.37 E N
30 C10 H10 C H sing 1.08 N N
31 C11 C12 C C sing 1.4 N N
32 C11 H11 C H sing 1.08 N N
33 C12 C13 C C sing 1.51 N N
34 C12 C14 C C doub 1.38 E N
35 C13 H131 C H sing 1.09 N N
36 C13 H132 C H sing 1.09 N N
37 C13 H133 C H sing 1.09 N N
38 C14 C15 C C sing 1.4 N N
39 C14 H14 C H sing 1.08 N N
40 C15 C16 C C doub 1.38 E N
41 C15 H15 C H sing 1.08 N N
42 C16 C17 C C sing 1.4 N N
43 C16 H16 C H sing 1.08 N N
44 C17 C18 C C sing 1.51 N N
45 C17 C19 C C doub 1.38 Z N
46 C18 H181 C H sing 1.09 N N
47 C18 H182 C H sing 1.09 N N
48 C18 H183 C H sing 1.09 N N
49 C19 C20 C C sing 1.4 N N
50 C19 H19 C H sing 1.08 N N
51 C20 C21 C C doub 1.38 E N
52 C20 H20 C H sing 1.08 N N
53 C21 C22 C C sing 1.4 N N
54 C21 H21 C H sing 1.08 N N
55 C22 C23 C C doub 1.36 E N
56 C22 H22 C H sing 1.08 N N
57 C23 C24 C C sing 1.51 N N
58 C23 C25 C C sing 1.41 N N
59 C24 H241 C H sing 1.09 N N
60 C24 H242 C H sing 1.09 N N
61 C24 H243 C H sing 1.09 N N
62 C25 C26 C C doub 1.36 E N
63 C25 H25 C H sing 1.08 N N
64 C26 C27 C C sing 1.42 N N
65 C26 H26 C H sing 1.08 N N
66 C27 C28 C C doub 1.34 E N
67 C27 H27 C H sing 1.08 N N
68 C28 C29 C C sing 1.51 N N
69 C28 C30 C C sing 1.51 N N
70 C29 H291 C H sing 1.09 N N
71 C29 H292 C H sing 1.09 N N
72 C29 H293 C H sing 1.09 N N
73 C30 C31 C C sing 1.53 N N
74 C30 H301 C H sing 1.09 N N
75 C30 H302 C H sing 1.09 N N
76 C31 C32 C C sing 1.51 N N
77 C31 H311 C H sing 1.09 N N
78 C31 H312 C H sing 1.09 N N
79 C32 C33 C C doub 1.31 E N
80 C32 H32 C H sing 1.08 N N
81 C33 C34 C C sing 1.51 N N
82 C33 C35 C C sing 1.51 N N
83 C34 H341 C H sing 1.09 N N
84 C34 H342 C H sing 1.09 N N
85 C34 H343 C H sing 1.09 N N
86 C35 C36 C C sing 1.53 N N
87 C35 H351 C H sing 1.09 N N
88 C35 H352 C H sing 1.09 N N
89 C36 C37 C C sing 1.51 N N
90 C36 H361 C H sing 1.09 N N
91 C36 H362 C H sing 1.09 N N
92 C37 C38 C C doub 1.31 N N
93 C37 H37 C H sing 1.08 N N
94 C38 C39 C C sing 1.51 N N
95 C38 C40 C C sing 1.51 N N
96 C39 H391 C H sing 1.09 N N
97 C39 H392 C H sing 1.09 N N
98 C39 H393 C H sing 1.09 N N
99 C40 H401 C H sing 1.09 N N
100 C40 H402 C H sing 1.09 N N
101 C40 H403 C H sing 1.09 N N