Chemical Components in the PDB

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PDBeChem : Chemical Bonds

 Molecule : ST1    

Bonds between two atoms of the molecule

Total Number of Bonds: 25


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 C' O1' C O doub 1.23 N N
2 C' O2' C O sing 1.36 N N
3 C' C1 C C sing 1.46 N N
4 O2' HO2' O H sing 0.98 N N
5 C1 C2 C C doub 1.39 N Y
6 C1 C6 C C sing 1.39 N Y
7 C2 C3 C C sing 1.4 N Y
8 C2 H2 C H sing 1.09 N N
9 C3 O3 C O sing 1.36 N N
10 C3 C4 C C doub 1.39 N Y
11 O3 HO3 O H sing 0.97 N N
12 C4 N4 C N sing 1.4 N N
13 C4 C5 C C sing 1.39 N Y
14 N4 C4' N C sing 1.4 N N
15 N4 HN4 N H sing 1.02 N N
16 C4' O4' C O doub 1.23 N N
17 C4' CM4 C C sing 1.51 N N
18 CM4 HM41 C H sing 1.09 N N
19 CM4 HM42 C H sing 1.09 N N
20 CM4 HM43 C H sing 1.09 N N
21 C5 N5 C N sing 1.42 N N
22 C5 C6 C C doub 1.39 N Y
23 N5 ON1 N O doub 1.25 N N
24 N5 ON2 N O sing 1.25 N N
25 C6 H6 C H sing 1.09 N N