Chemical Components in the PDB

pdbe.org/chem
wwPDB
EMDataBank
spacer

PDBeChem : Chemical Bonds

 Molecule : SYD    

Bonds between two atoms of the molecule

Total Number of Bonds: 30


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 C1 C2 C C doub 1.38 N Y
2 C1 C6 C C sing 1.38 N Y
3 C2 C3 C C sing 1.39 N Y
4 C3 C4 C C doub 1.39 N Y
5 C3 C12 C C sing 1.48 N Y
6 C4 C5 C C sing 1.38 N Y
7 C5 C6 C C doub 1.38 N Y
8 C12 C13 C C doub 1.39 N Y
9 C12 C17 C C sing 1.4 N Y
10 C13 N14 C N sing 1.32 N Y
11 N14 C15 N C doub 1.32 N Y
12 C15 C16 C C sing 1.38 N Y
13 C15 C21 C C sing 1.51 N N
14 C16 C17 C C doub 1.38 N Y
15 C21 P22 C P sing 1.82 N N
16 P22 O25 P O doub 1.48 N N
17 P22 O26 P O sing 1.61 N N
18 P22 O27 P O sing 1.61 N N
19 C1 H1 C H sing 1.08 N N
20 C2 H2 C H sing 1.08 N N
21 C4 H4 C H sing 1.08 N N
22 C5 H5 C H sing 1.08 N N
23 C6 H6 C H sing 1.08 N N
24 C13 H13 C H sing 1.08 N N
25 C16 H16 C H sing 1.08 N N
26 C17 H17 C H sing 1.08 N N
27 C21 H21 C H sing 1.09 N N
28 C21 H21A C H sing 1.09 N N
29 O26 HO26 O H sing 0.97 N N
30 O27 HO27 O H sing 0.97 N N