Chemical Components in the PDB

pdbe.org/chem
wwPDB
EMDataBank
spacer

PDBeChem : Chemical Bonds

 Molecule : T12    

Bonds between two atoms of the molecule

Total Number of Bonds: 58


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 O56 N54 O N sing 1.25 N N
2 N54 O55 N O doub 1.25 N N
3 N54 C13 N C sing 1.42 N N
4 C13 C14 C C sing 1.39 N Y
5 C13 C12 C C doub 1.4 N Y
6 C12 C11 C C sing 1.39 N Y
7 C12 H12 C H sing 1.09 N N
8 C11 C10 C C doub 1.4 N Y
9 C11 H11 C H sing 1.09 N N
10 C10 C15 C C sing 1.39 N Y
11 C10 H10 C H sing 1.09 N N
12 C14 C15 C C doub 1.39 N Y
13 C14 H14 C H sing 1.09 N N
14 C15 C51 C C sing 1.47 N N
15 C51 N50 C N sing 1.42 N N
16 C51 O53 C O doub 1.23 N N
17 N50 C21 N C sing 1.37 N N
18 N50 HN50 N H sing 1.04 N N
19 C21 N20 C N sing 1.37 N Y
20 C21 N22 C N doub 1.31 N Y
21 N22 C3 N C sing 1.38 N Y
22 C3 C4 C C doub 1.41 N Y
23 C3 C2 C C sing 1.39 N Y
24 C4 C5 C C sing 1.42 N Y
25 C4 H4 C H sing 1.09 N N
26 C5 O23 C O sing 1.33 N N
27 C5 C6 C C doub 1.41 N Y
28 O23 C24 O C sing 1.37 N N
29 C24 C25 C C sing 1.53 N N
30 C24 O26 C O doub 1.23 N N
31 C25 C31 C C sing 1.53 N N
32 C25 C27 C C sing 1.54 N N
33 C25 C35 C C sing 1.53 N N
34 C35 H351 C H sing 1.1 N N
35 C35 H352 C H sing 1.1 N N
36 C35 H353 C H sing 1.1 N N
37 C31 H311 C H sing 1.1 N N
38 C31 H312 C H sing 1.1 N N
39 C31 H313 C H sing 1.1 N N
40 C27 H271 C H sing 1.1 N N
41 C27 H272 C H sing 1.1 N N
42 C27 H273 C H sing 1.1 N N
43 C6 C1 C C sing 1.4 N Y
44 C6 H6 C H sing 1.09 N N
45 C2 C1 C C doub 1.39 N Y
46 C2 N20 C N sing 1.37 N Y
47 C1 H1 C H sing 1.08 N N
48 N20 C39 N C sing 1.45 N N
49 C39 C40 C C sing 1.53 N N
50 C39 H391 C H sing 1.1 N N
51 C39 H392 C H sing 1.1 N N
52 C40 C43 C C sing 1.52 N N
53 C40 H401 C H sing 1.1 N N
54 C40 H402 C H sing 1.1 N N
55 C43 O46 C O sing 1.42 N N
56 C43 H431 C H sing 1.09 N N
57 C43 H432 C H sing 1.09 N N
58 O46 HO46 O H sing 0.97 N N