Chemical Components in the PDB

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PDBeChem : Chemical Bonds

 Molecule : TD2    

Bonds between two atoms of the molecule

Total Number of Bonds: 80


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 O61 C61 O C sing 1.43 N N
2 C61 C51 C C sing 1.53 N N
3 C51 O51 C O sing 1.43 N N
4 C51 C41 C C sing 1.53 N N
5 O51 C11 O C sing 1.43 N N
6 O6 C6 O C sing 1.43 N N
7 C5 C6 C C sing 1.53 N N
8 C5 O5 C O sing 1.43 N N
9 C5 C4 C C sing 1.53 N N
10 C41 O41 C O sing 1.43 N N
11 C41 C31 C C sing 1.53 N N
12 O5 C1 O C sing 1.43 N N
13 C4 C3 C C sing 1.53 N N
14 C4 O4 C O sing 1.43 N N
15 C1 C2 C C sing 1.53 N N
16 C1 S1 C S sing 1.81 N N
17 C3 C2 C C sing 1.53 N N
18 C3 N71 C N sing 1.47 N N
19 N8 N71 N N sing 1.29 N Y
20 N8 N9 N N doub 1.29 N Y
21 C11 S1 C S sing 1.81 N N
22 C11 C21 C C sing 1.53 N N
23 O21 C2 O C sing 1.43 N N
24 C31 C21 C C sing 1.53 N N
25 C31 N7 C N sing 1.46 N N
26 N71 C71 N C sing 1.35 N Y
27 N9 C10 N C sing 1.34 N Y
28 C21 O2 C O sing 1.43 N N
29 N11 N7 N N sing 1.29 N Y
30 N11 N10 N N doub 1.29 N Y
31 N7 C8 N C sing 1.35 N Y
32 C71 C10 C C doub 1.36 N Y
33 N10 C9 N C sing 1.35 N Y
34 C10 C22 C C sing 1.48 N N
35 C8 C9 C C doub 1.37 N Y
36 C9 C12 C C sing 1.48 N N
37 C23 C22 C C doub 1.39 N Y
38 C23 C24 C C sing 1.38 N Y
39 C22 C27 C C sing 1.39 N Y
40 C24 C25 C C doub 1.38 N Y
41 C12 C13 C C doub 1.39 N Y
42 C12 C17 C C sing 1.39 N Y
43 C27 C26 C C doub 1.38 N Y
44 C13 C14 C C sing 1.38 N Y
45 C17 C16 C C doub 1.38 N Y
46 C25 C26 C C sing 1.39 N Y
47 C26 F28 C F sing 1.35 N N
48 C14 F18 C F sing 1.35 N N
49 C14 C15 C C doub 1.39 N Y
50 C16 C15 C C sing 1.38 N Y
51 C1 H1 C H sing 1.09 N N
52 C2 H2 C H sing 1.09 N N
53 C3 H3 C H sing 1.09 N N
54 C4 H4 C H sing 1.09 N N
55 C5 H5 C H sing 1.09 N N
56 C6 H6 C H sing 1.09 N N
57 C6 H7 C H sing 1.09 N N
58 C13 H8 C H sing 1.08 N N
59 C11 H9 C H sing 1.09 N N
60 C51 H10 C H sing 1.09 N N
61 C61 H11 C H sing 1.09 N N
62 C61 H12 C H sing 1.09 N N
63 O6 H13 O H sing 0.97 N N
64 O61 H14 O H sing 0.97 N N
65 C41 H15 C H sing 1.09 N N
66 O4 H16 O H sing 0.97 N N
67 O41 H17 O H sing 0.97 N N
68 C31 H18 C H sing 1.09 N N
69 C21 H19 C H sing 1.09 N N
70 O2 H20 O H sing 0.97 N N
71 O21 H21 O H sing 0.97 N N
72 C8 H22 C H sing 1.08 N N
73 C71 H23 C H sing 1.08 N N
74 C15 H24 C H sing 1.08 N N
75 C16 H25 C H sing 1.08 N N
76 C17 H26 C H sing 1.08 N N
77 C23 H27 C H sing 1.08 N N
78 C24 H28 C H sing 1.08 N N
79 C25 H29 C H sing 1.08 N N
80 C27 H30 C H sing 1.08 N N