Chemical Components in the PDB

pdbe.org/chem
wwPDB
EMDataBank
spacer

PDBeChem : Chemical Bonds

 Molecule : U33    

Bonds between two atoms of the molecule

Total Number of Bonds: 29


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 N1 C2 N C sing 1.34 N N
2 N1 C6 N C sing 1.37 N N
3 N1 C1' N C sing 1.47 N N
4 C2 N3 C N sing 1.34 N N
5 C2 O2 C O doub 1.22 N N
6 N3 C4 N C sing 1.35 N N
7 N3 H3 N H sing 0.97 N N
8 C4 C5 C C sing 1.42 N N
9 C4 O4 C O doub 1.22 N N
10 C5 C6 C C doub 1.35 N N
11 C5 BR C BR sing 1.89 N N
12 C6 H6 C H sing 1.08 N N
13 C1' C2' C C sing 1.54 N N
14 C1' O4' C O sing 1.44 N N
15 C1' H1' C H sing 1.09 N N
16 C2' C3' C C sing 1.55 N N
17 C2' H2'1 C H sing 1.09 N N
18 C2' H2'2 C H sing 1.09 N N
19 C3' C4' C C sing 1.55 N N
20 C3' O3' C O sing 1.43 N N
21 C3' H3' C H sing 1.09 N N
22 C4' O4' C O sing 1.44 N N
23 C4' C5' C C sing 1.53 N N
24 C4' H4' C H sing 1.09 N N
25 O3' HA O H sing 0.97 N N
26 C5' O5' C O sing 1.43 N N
27 C5' H5'1 C H sing 1.09 N N
28 C5' H5'2 C H sing 1.09 N N
29 O5' H5' O H sing 0.97 N N