Chemical Components in the PDB

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PDBeChem : Chemical Bonds

 Molecule : UE1    

Bonds between two atoms of the molecule

Total Number of Bonds: 77


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 N1 C2 N C sing 1.35 N N
2 N1 N5 N N sing 1.4 N N
3 N1 S32 N S sing 1.66 N N
4 C2 N3 C N sing 1.35 N N
5 C2 O35 C O doub 1.22 N N
6 N3 C4 N C sing 1.38 N N
7 N3 C36 N C sing 1.47 N N
8 C4 N5 C N doub 1.3 N N
9 C4 C41 C C sing 1.48 N N
10 N6 C7 N C doub 1.3 N Y
11 N6 C27 N C sing 1.33 N Y
12 C7 S8 C S sing 1.76 N Y
13 C7 N28 C N sing 1.39 N N
14 S8 C9 S C sing 1.76 N Y
15 C9 C27 C C doub 1.35 N Y
16 C10 C11 C C sing 1.51 N N
17 C10 C13 C C sing 1.53 N N
18 C10 N15 C N sing 1.46 N N
19 C11 O14 C O doub 1.21 N N
20 N12 C13 N C sing 1.46 N N
21 N12 C29 N C sing 1.35 N N
22 N15 C16 N C sing 1.35 N N
23 C16 O17 C O doub 1.21 N N
24 C16 C18 C C sing 1.48 N N
25 C18 N19 C N doub 1.3 Z N
26 C18 C27 C C sing 1.48 N N
27 N19 O20 N O sing 1.42 N N
28 O20 C21 O C sing 1.43 N N
29 C21 C22 C C sing 1.51 N N
30 C21 C23 C C sing 1.53 N N
31 C21 C24 C C sing 1.53 N N
32 C22 O25 C O doub 1.22 N N
33 C22 O26 C O sing 1.22 N N
34 C29 O30 C O doub 1.22 N N
35 C29 N31 C N sing 1.35 N N
36 N31 S32 N S sing 1.66 N N
37 S32 O33 S O doub 1.42 N N
38 S32 O34 S O doub 1.42 N N
39 C36 C37 C C sing 1.53 N N
40 C37 C38 C C sing 1.53 N N
41 C37 O39 C O sing 1.43 N N
42 C38 O40 C O sing 1.43 N N
43 C41 N42 C N doub 1.33 N Y
44 C41 C46 C C sing 1.39 N Y
45 N42 C43 N C sing 1.32 N Y
46 C43 C44 C C doub 1.39 N Y
47 C44 C45 C C sing 1.4 N Y
48 C44 O48 C O sing 1.36 N N
49 C45 C46 C C doub 1.39 N Y
50 C45 O47 C O sing 1.36 N N
51 C9 H9 C H sing 1.08 N N
52 C10 H10 C H sing 1.09 N N
53 C11 H11 C H sing 1.08 N N
54 N12 HN12 N H sing 0.97 N N
55 C13 H13 C H sing 1.09 N N
56 C13 H13A C H sing 1.09 N N
57 N15 HN15 N H sing 0.97 N N
58 C23 H23 C H sing 1.09 N N
59 C23 H23A C H sing 1.09 N N
60 C23 H23B C H sing 1.09 N N
61 C24 H24 C H sing 1.09 N N
62 C24 H24A C H sing 1.09 N N
63 C24 H24B C H sing 1.09 N N
64 N28 HN28 N H sing 0.97 N N
65 N28 HN2A N H sing 0.97 N N
66 N31 HN31 N H sing 0.97 N N
67 C36 H36 C H sing 1.09 N N
68 C36 H36A C H sing 1.09 N N
69 C37 H37 C H sing 1.09 N N
70 C38 H38 C H sing 1.09 N N
71 C38 H38A C H sing 1.09 N N
72 O39 HO39 O H sing 0.97 N N
73 O40 HO40 O H sing 0.97 N N
74 C43 H43 C H sing 1.08 N N
75 C46 H46 C H sing 1.08 N N
76 O47 HO47 O H sing 0.97 N N
77 O48 HO48 O H sing 0.97 N N