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PDBeChem : Chemical Bonds
Molecule :
UGA
Bonds between two atoms of the molecule
Total Number of Bonds: 61
50
10 per page
20 per page
Show all
Record
First Atom
Second Atom
First Element
Second Element
Bond Order Type
Bond Length
Bond Stereochemistry
Is Aromatic
1
C1'
C2'
C
C
sing
1.53
N
N
2
C1'
O5'
C
O
sing
1.43
N
N
3
C1'
O3B
C
O
sing
1.43
N
N
4
C1'
H1'1
C
H
sing
1.09
N
N
5
C2'
O2'
C
O
sing
1.43
N
N
6
C2'
C3'
C
C
sing
1.53
N
N
7
C2'
H2'1
C
H
sing
1.09
N
N
8
O2'
HO'2
O
H
sing
0.97
N
N
9
C3'
O3'
C
O
sing
1.43
N
N
10
C3'
C4'
C
C
sing
1.53
N
N
11
C3'
H3'1
C
H
sing
1.09
N
N
12
O3'
HO'3
O
H
sing
0.97
N
N
13
C4'
O4'
C
O
sing
1.43
N
N
14
C4'
C5'
C
C
sing
1.53
N
N
15
C4'
H4'1
C
H
sing
1.09
N
N
16
O4'
HO'4
O
H
sing
0.97
N
N
17
C5'
O5'
C
O
sing
1.43
N
N
18
C5'
C6'
C
C
sing
1.51
N
N
19
C5'
H5'1
C
H
sing
1.09
N
N
20
C6'
O'P
C
O
doub
1.21
N
N
21
C6'
O'Q
C
O
sing
1.34
N
N
22
O'Q
HO'6
O
H
sing
0.97
N
N
23
PB
O1B
P
O
doub
1.48
N
N
24
PB
O2B
P
O
sing
1.61
N
N
25
PB
O3B
P
O
sing
1.61
N
N
26
PB
O3A
P
O
sing
1.61
N
N
27
O2B
HOB2
O
H
sing
0.97
N
N
28
O3A
PA
O
P
sing
1.61
N
N
29
PA
O1A
P
O
doub
1.48
N
N
30
PA
O2A
P
O
sing
1.61
N
N
31
PA
O5D
P
O
sing
1.61
N
N
32
O2A
HOA2
O
H
sing
0.97
N
N
33
O5D
C5D
O
C
sing
1.43
N
N
34
C5D
C4D
C
C
sing
1.53
N
N
35
C5D
H5A1
C
H
sing
1.09
N
N
36
C5D
H5'2
C
H
sing
1.09
N
N
37
C4D
O4D
C
O
sing
1.44
N
N
38
C4D
C3D
C
C
sing
1.54
N
N
39
C4D
H4A1
C
H
sing
1.09
N
N
40
O4D
C1D
O
C
sing
1.44
N
N
41
C3D
O3D
C
O
sing
1.43
N
N
42
C3D
C2D
C
C
sing
1.55
N
N
43
C3D
H3A1
C
H
sing
1.09
N
N
44
O3D
HOA3
O
H
sing
0.97
N
N
45
C2D
O2D
C
O
sing
1.43
N
N
46
C2D
C1D
C
C
sing
1.55
N
N
47
C2D
H2A1
C
H
sing
1.09
N
N
48
O2D
HOC2
O
H
sing
0.97
N
N
49
C1D
N1
C
N
sing
1.46
N
N
50
C1D
H1A1
C
H
sing
1.09
N
N
51
N1
C6
N
C
sing
1.37
N
Y
52
N1
C2
N
C
sing
1.35
N
Y
53
C6
C5
C
C
doub
1.35
N
Y
54
C6
H61
C
H
sing
1.08
N
N
55
C2
O2
C
O
doub
1.22
N
N
56
C2
N3
C
N
sing
1.35
N
Y
57
N3
C4
N
C
sing
1.35
N
Y
58
N3
HN3
N
H
sing
0.97
N
N
59
C4
O4
C
O
doub
1.22
N
N
60
C4
C5
C
C
sing
1.42
N
Y
61
C5
H51
C
H
sing
1.08
N
N