Chemical Components in the PDB

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PDBeChem : Chemical Bonds

 Molecule : UMA    

Bonds between two atoms of the molecule

Total Number of Bonds: 87


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 N1 C2 N C sing 1.34 N N
2 N1 C6 N C sing 1.37 N N
3 N1 C1B N C sing 1.47 N N
4 C2 N3 C N sing 1.35 N N
5 C2 O2 C O doub 1.22 N N
6 N3 C4 N C sing 1.35 N N
7 N3 HN3 N H sing 0.97 N N
8 C4 C5 C C sing 1.42 N N
9 C4 O4 C O doub 1.22 N N
10 C5 C6 C C doub 1.35 N N
11 C5 H5 C H sing 1.08 N N
12 C6 H6 C H sing 1.08 N N
13 C1B C2B C C sing 1.55 N N
14 C1B O4B C O sing 1.44 N N
15 C1B H1B C H sing 1.09 N N
16 C2B O2' C O sing 1.43 N N
17 C2B C3B C C sing 1.55 N N
18 C2B H2B C H sing 1.09 N N
19 O2' HO2' O H sing 0.97 N N
20 C3B C4B C C sing 1.54 N N
21 C3B O3B C O sing 1.43 N N
22 C3B H3B C H sing 1.09 N N
23 C4B O4B C O sing 1.44 N N
24 C4B C5B C C sing 1.53 N N
25 C4B H4B C H sing 1.09 N N
26 O3B HO3' O H sing 0.97 N N
27 C5B O5B C O sing 1.43 N N
28 C5B H5'1 C H sing 1.09 N N
29 C5B H5'2 C H sing 1.09 N N
30 O5B PA O P sing 1.61 N N
31 PA O1A P O doub 1.48 N N
32 PA O2A P O sing 1.61 N N
33 PA O3A P O sing 1.61 N N
34 O2A HOA2 O H sing 0.97 N N
35 O3A PB O P sing 1.61 N N
36 PB O1B P O doub 1.48 N N
37 PB O2B P O sing 1.61 N N
38 PB O1' P O sing 1.61 N N
39 O2B HOB2 O H sing 0.97 N N
40 O1' C1' O C sing 1.43 N N
41 C1' C2' C C sing 1.53 N N
42 C1' O5' C O sing 1.43 N N
43 C1' H1' C H sing 1.09 N N
44 C2' N2' C N sing 1.46 N N
45 C2' C3' C C sing 1.53 N N
46 C2' H2' C H sing 1.09 N N
47 N2' C7' N C sing 1.35 N N
48 N2' HN2 N H sing 0.97 N N
49 C7' O7' C O doub 1.21 N N
50 C7' C8' C C sing 1.51 N N
51 C8' H8'1 C H sing 1.09 N N
52 C8' H8'2 C H sing 1.09 N N
53 C8' H8'3 C H sing 1.09 N N
54 C3' O3' C O sing 1.43 N N
55 C3' C4' C C sing 1.53 N N
56 C3' H3' C H sing 1.09 N N
57 O3' C18 O C sing 1.43 N N
58 C4' O4' C O sing 1.43 N N
59 C4' C5' C C sing 1.53 N N
60 C4' H4' C H sing 1.09 N N
61 O4' HO4 O H sing 0.97 N N
62 C5' O5' C O sing 1.43 N N
63 C5' C6' C C sing 1.53 N N
64 C5' H5' C H sing 1.09 N N
65 C6' O6' C O sing 1.43 N N
66 C6' H6'1 C H sing 1.09 N N
67 C6' H6'2 C H sing 1.09 N N
68 O6' HO6 O H sing 0.97 N N
69 C18 C19 C C sing 1.51 N N
70 C18 C20 C C sing 1.53 N N
71 C18 H18 C H sing 1.09 N N
72 C19 O18 C O doub 1.21 N N
73 C19 N4 C N sing 1.35 N N
74 C20 H201 C H sing 1.09 N N
75 C20 H202 C H sing 1.09 N N
76 C20 H203 C H sing 1.09 N N
77 N4 C21 N C sing 1.47 N N
78 N4 HN4 N H sing 0.97 N N
79 C21 C22 C C sing 1.51 N N
80 C21 C23 C C sing 1.53 N N
81 C21 H21 C H sing 1.09 N N
82 C22 O19 C O doub 1.21 N N
83 C22 O20 C O sing 1.34 N N
84 O20 HO2 O H sing 0.97 N N
85 C23 H231 C H sing 1.09 N N
86 C23 H232 C H sing 1.09 N N
87 C23 H233 C H sing 1.09 N N