Chemical Components in the PDB

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PDBeChem : Chemical Bonds

 Molecule : UPB    

Bonds between two atoms of the molecule

Total Number of Bonds: 82


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 O2D CGD O C doub 1.21 N N
2 CGD O1D C O sing 1.34 N N
3 CGD CBD C C sing 1.51 N N
4 O2A CGA O C doub 1.21 N N
5 CBD CAD C C sing 1.53 N N
6 O1A CGA O C sing 1.34 N N
7 CGA CBA C C sing 1.51 N N
8 CAD C3D C C sing 1.51 N N
9 CBA CAA C C sing 1.53 N N
10 CMD C2D C C sing 1.51 N N
11 C3D C2D C C doub 1.36 N N
12 C3D C4D C C sing 1.42 N N
13 C2D C1D C C sing 1.42 N N
14 CAA C2A C C sing 1.51 N N
15 C4D CHA C C doub 1.4 Z N
16 C4D ND C N sing 1.35 N N
17 CHA C1A C C sing 1.4 N N
18 C1D ND C N doub 1.33 N N
19 C1D CHD C C sing 1.46 N N
20 CHD C4C C C doub 1.36 Z N
21 C1A C2A C C doub 1.4 N Y
22 C1A NA C N sing 1.38 N Y
23 C2A C3A C C sing 1.38 N Y
24 NC C4C N C sing 1.38 N N
25 NC C1C N C sing 1.34 N N
26 C4C C3C C C sing 1.47 N N
27 CMC C2C C C sing 1.53 N N
28 OC C1C O C doub 1.21 N N
29 C1C C2C C C sing 1.51 N N
30 C3A CMA C C sing 1.51 N N
31 C3A C4A C C doub 1.39 N Y
32 NA C4A N C sing 1.37 N Y
33 C3C CAC C C doub 1.33 Z N
34 C3C C2C C C sing 1.52 N N
35 CAC CBC C C sing 1.51 N N
36 C4A CHB C C sing 1.41 N N
37 CHB C1B C C doub 1.38 Z N
38 C1B NB C N sing 1.39 N N
39 C1B C2B C C sing 1.41 N N
40 NB C4B N C sing 1.35 N N
41 C2B CMB C C sing 1.51 N N
42 C2B C3B C C doub 1.38 N N
43 C4B C3B C C sing 1.47 N N
44 C4B OB C O doub 1.22 N N
45 C3B CAB C C sing 1.47 N N
46 CBB CAB C C doub 1.33 N N
47 CHA H1 C H sing 1.08 N N
48 NA H3 N H sing 0.97 N N
49 CMA H4 C H sing 1.09 N N
50 CMA H5 C H sing 1.09 N N
51 CMA H6 C H sing 1.09 N N
52 CAA H7 C H sing 1.09 N N
53 CAA H8 C H sing 1.09 N N
54 CBA H9 C H sing 1.09 N N
55 CBA H10 C H sing 1.09 N N
56 O1A H11 O H sing 0.97 N N
57 CHB H12 C H sing 1.08 N N
58 CMB H14 C H sing 1.09 N N
59 CMB H15 C H sing 1.09 N N
60 CMB H16 C H sing 1.09 N N
61 CAB H17 C H sing 1.08 N N
62 CBB H18 C H sing 1.08 N N
63 CBB H19 C H sing 1.08 N N
64 NC H20 N H sing 0.97 N N
65 C2C H21 C H sing 1.09 N N
66 CMC H23 C H sing 1.09 N N
67 CMC H24 C H sing 1.09 N N
68 CMC H25 C H sing 1.09 N N
69 CAC H26 C H sing 1.08 N N
70 CBC H28 C H sing 1.09 N N
71 CBC H29 C H sing 1.09 N N
72 CBC H30 C H sing 1.09 N N
73 CHD H31 C H sing 1.08 N N
74 CMD H33 C H sing 1.09 N N
75 CMD H34 C H sing 1.09 N N
76 CMD H35 C H sing 1.09 N N
77 CAD H36 C H sing 1.09 N N
78 CAD H37 C H sing 1.09 N N
79 CBD H38 C H sing 1.09 N N
80 CBD H39 C H sing 1.09 N N
81 O1D H40 O H sing 0.97 N N
82 NB H2 N H sing 0.97 N N