Chemical Components in the PDB

pdbe.org/chem
wwPDB
EMDataBank
spacer

PDBeChem : Chemical Bonds

 Molecule : V1W    

Bonds between two atoms of the molecule

Total Number of Bonds: 62


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 C21 C20 C C doub 1.38 N Y
2 C21 C16 C C sing 1.38 N Y
3 C20 C19 C C sing 1.38 N Y
4 C19 C18 C C doub 1.38 N Y
5 C16 C15 C C sing 1.51 N N
6 C16 C17 C C doub 1.38 N Y
7 C15 C6 C C sing 1.51 N N
8 C13 C14 C C doub 1.36 N Y
9 C13 C12 C C sing 1.4 N Y
10 C18 C17 C C sing 1.38 N Y
11 C14 C10 C C sing 1.4 N Y
12 O1 C12 O C sing 1.36 N N
13 N3 C6 N C doub 1.3 N N
14 N3 C5 N C sing 1.34 N N
15 C6 C2 C C sing 1.47 N N
16 C12 C11 C C doub 1.38 N Y
17 C10 C5 C C doub 1.46 N Y
18 C10 C9 C C sing 1.41 N Y
19 C5 C4 C C sing 1.4 N Y
20 C2 N2 C N doub 1.31 N N
21 C2 N1 C N sing 1.38 N N
22 C11 C9 C C sing 1.4 N Y
23 C9 C8 C C doub 1.41 N Y
24 N2 C3 N C sing 1.47 N N
25 C4 N1 C N sing 1.39 N N
26 C4 C7 C C doub 1.4 N Y
27 N1 C1 N C sing 1.35 N N
28 O3 O4 O O sing 1.47 N N
29 O3 C3 O C sing 1.43 N N
30 C8 C7 C C sing 1.36 N Y
31 C3 C1 C C sing 1.52 N N
32 C3 C22 C C sing 1.53 N N
33 C1 O2 C O doub 1.21 N N
34 C22 C23 C C sing 1.51 N N
35 C23 C28 C C doub 1.38 N Y
36 C23 C24 C C sing 1.38 N Y
37 C28 C27 C C sing 1.38 N Y
38 C24 C25 C C doub 1.38 N Y
39 C27 C26 C C doub 1.39 N Y
40 C25 C26 C C sing 1.39 N Y
41 C26 O5 C O sing 1.36 N N
42 C11 H1 C H sing 1.08 N N
43 C13 H2 C H sing 1.08 N N
44 C14 H3 C H sing 1.08 N N
45 C15 H4 C H sing 1.09 N N
46 C15 H5 C H sing 1.09 N N
47 C17 H6 C H sing 1.08 N N
48 C18 H7 C H sing 1.08 N N
49 C19 H8 C H sing 1.08 N N
50 C20 H9 C H sing 1.08 N N
51 C21 H10 C H sing 1.08 N N
52 C22 H11 C H sing 1.09 N N
53 C22 H12 C H sing 1.09 N N
54 C24 H13 C H sing 1.08 N N
55 C25 H14 C H sing 1.08 N N
56 C27 H15 C H sing 1.08 N N
57 C28 H16 C H sing 1.08 N N
58 C7 H17 C H sing 1.08 N N
59 C8 H18 C H sing 1.08 N N
60 O1 H20 O H sing 0.97 N N
61 O4 H21 O H sing 0.97 N N
62 O5 H22 O H sing 0.97 N N