Chemical Components in the PDB

pdbe.org/chem
wwPDB
EMDataBank
spacer

PDBeChem : Chemical Bonds

 Molecule : V7A    

Bonds between two atoms of the molecule

Total Number of Bonds: 67


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 OBI CAR O C sing 1.34 N N
2 OBE CBC O C doub 1.22 N N
3 CBG NBF C N sing 1.47 N N
4 CBC NBD C N sing 1.35 N N
5 CBC CAQ C C sing 1.47 N N
6 CAR CAQ C C doub 1.37 N N
7 CAR CAO C C sing 1.5 N N
8 NBF CAO N C sing 1.47 N N
9 NBF CBH N C sing 1.47 N N
10 CAQ CAP C C sing 1.46 N N
11 CAO CAN C C sing 1.52 N N
12 CAP OBB C O doub 1.21 N N
13 CAP CAM C C sing 1.52 N N
14 CAN CAM C C sing 1.53 N N
15 CAN CAK C C sing 1.53 N N
16 OBA CAM O C sing 1.43 N N
17 CAM CAL C C sing 1.51 N N
18 CAK CAJ C C sing 1.53 N N
19 CAL OAZ C O sing 1.35 N N
20 CAL CAI C C doub 1.34 N N
21 CAJ CAI C C sing 1.51 N N
22 CAJ CAG C C sing 1.53 N N
23 CAI CAH C C sing 1.43 N N
24 CAG CAF C C sing 1.51 N N
25 CAV OAU C O sing 1.43 N N
26 OAU NAT O N sing 1.46 N N
27 CAH OAY C O doub 1.22 N N
28 CAH CAE C C sing 1.48 N N
29 CAF CAE C C doub 1.4 N Y
30 CAF CAA C C sing 1.38 N Y
31 CAW NAT C N sing 1.47 N N
32 CAS NAT C N sing 1.47 N N
33 CAS CAA C C sing 1.51 N N
34 CAE CAD C C sing 1.4 N Y
35 CAA CAB C C doub 1.38 N Y
36 CAD OAX C O sing 1.36 N N
37 CAD CAC C C doub 1.39 N Y
38 CAB CAC C C sing 1.38 N Y
39 CAB H1 C H sing 1.08 N N
40 CAC H2 C H sing 1.08 N N
41 CAG H3 C H sing 1.09 N N
42 CAG H4 C H sing 1.09 N N
43 CAJ H5 C H sing 1.09 N N
44 CAK H6 C H sing 1.09 N N
45 CAK H7 C H sing 1.09 N N
46 CAN H8 C H sing 1.09 N N
47 CAO H9 C H sing 1.09 N N
48 CAS H10 C H sing 1.09 N N
49 CAS H11 C H sing 1.09 N N
50 CAV H12 C H sing 1.09 N N
51 CAV H13 C H sing 1.09 N N
52 CAV H14 C H sing 1.09 N N
53 CAW H15 C H sing 1.09 N N
54 CAW H16 C H sing 1.09 N N
55 CAW H17 C H sing 1.09 N N
56 CBG H18 C H sing 1.09 N N
57 CBG H19 C H sing 1.09 N N
58 CBG H20 C H sing 1.09 N N
59 CBH H21 C H sing 1.09 N N
60 CBH H22 C H sing 1.09 N N
61 CBH H23 C H sing 1.09 N N
62 NBD H24 N H sing 0.97 N N
63 NBD H25 N H sing 0.97 N N
64 OAX H27 O H sing 0.97 N N
65 OAZ H28 O H sing 0.97 N N
66 OBA H29 O H sing 0.97 N N
67 OBI H30 O H sing 0.97 N N