Chemical Components in the PDB

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PDBeChem : Chemical Bonds

 Molecule : VEN    

Bonds between two atoms of the molecule

Total Number of Bonds: 72


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 O18 S17 O S doub 1.42 N N
2 O19 S17 O S doub 1.42 N N
3 S17 C20 S C sing 1.81 N N
4 S17 C13 S C sing 1.76 N N
5 O16 C15 O C doub 1.22 N N
6 C34 C33 C C sing 1.55 N N
7 C34 C35 C C sing 1.51 N N
8 C5 C6 C C sing 1.53 N N
9 C5 C4 C C sing 1.53 N N
10 C13 C14 C C doub 1.4 N Y
11 C13 C12 C C sing 1.37 N Y
12 C33 C32 C C sing 1.54 N N
13 O36 C35 O C doub 1.21 N N
14 C35 N31 C N sing 1.34 N N
15 C15 C14 C C sing 1.47 N N
16 C15 N7 C N sing 1.35 N N
17 C6 C4 C C sing 1.53 N N
18 C14 C9 C C sing 1.4 N Y
19 C12 C11 C C doub 1.4 N Y
20 C32 N31 C N sing 1.47 N N
21 N31 C29 N C sing 1.39 N N
22 C2 N7 C N sing 1.47 N N
23 C2 C4 C C sing 1.53 N N
24 C2 C1 C C sing 1.53 N N
25 N7 C8 N C sing 1.47 N N
26 C29 C28 C C doub 1.39 N Y
27 C29 N30 C N sing 1.32 N Y
28 C9 C8 C C sing 1.51 N N
29 C9 C10 C C doub 1.36 N Y
30 C11 C10 C C sing 1.4 N Y
31 C11 C21 C C sing 1.47 N N
32 C28 C27 C C sing 1.39 N Y
33 S22 C21 S C sing 1.76 N Y
34 S22 C23 S C sing 1.71 N Y
35 N30 C25 N C doub 1.33 N Y
36 C21 C38 C C doub 1.35 N Y
37 C27 C26 C C doub 1.38 N Y
38 C25 C26 C C sing 1.39 N Y
39 C25 N24 C N sing 1.39 N N
40 C23 N24 C N sing 1.38 N N
41 C23 N37 C N doub 1.3 N Y
42 C38 N37 C N sing 1.31 N Y
43 C38 C39 C C sing 1.51 N N
44 C1 H1 C H sing 1.09 N N
45 C1 H2 C H sing 1.09 N N
46 C1 H3 C H sing 1.09 N N
47 C2 H4 C H sing 1.09 N N
48 C8 H5 C H sing 1.09 N N
49 C8 H6 C H sing 1.09 N N
50 C10 H7 C H sing 1.08 N N
51 C12 H8 C H sing 1.08 N N
52 C20 H9 C H sing 1.09 N N
53 C20 H10 C H sing 1.09 N N
54 C20 H11 C H sing 1.09 N N
55 C27 H12 C H sing 1.08 N N
56 C32 H13 C H sing 1.09 N N
57 C33 H14 C H sing 1.09 N N
58 C34 H15 C H sing 1.09 N N
59 C34 H16 C H sing 1.09 N N
60 C4 H17 C H sing 1.09 N N
61 C5 H18 C H sing 1.09 N N
62 C5 H19 C H sing 1.09 N N
63 C6 H20 C H sing 1.09 N N
64 C6 H21 C H sing 1.09 N N
65 N24 H22 N H sing 0.97 N N
66 C26 H23 C H sing 1.08 N N
67 C28 H24 C H sing 1.08 N N
68 C39 H25 C H sing 1.09 N N
69 C39 H26 C H sing 1.09 N N
70 C39 H27 C H sing 1.09 N N
71 C32 H28 C H sing 1.09 N N
72 C33 H29 C H sing 1.09 N N