Chemical Components in the PDB

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PDBeChem : Chemical Bonds

 Molecule : VG3    

Bonds between two atoms of the molecule

Total Number of Bonds: 87


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 C1 N2 C N sing 1.37 N N
2 C1 O6 C O doub 1.24 N N
3 C1 C7 C C sing 1.47 N N
4 N2 C3 N C sing 1.48 N N
5 C3 C4 C C sing 1.54 N N
6 C3 C5 C C sing 1.55 N N
7 C4 O19 C O sing 1.41 N N
8 C4 C21 C C sing 1.54 N N
9 C5 C13 C C sing 1.51 N N
10 C7 C8 C C sing 1.43 N Y
11 C7 C12 C C doub 1.42 N Y
12 C8 C9 C C doub 1.42 N Y
13 C9 C10 C C sing 1.41 N Y
14 C10 C11 C C doub 1.42 N Y
15 C11 C12 C C sing 1.42 N Y
16 C11 S23 C S sing 1.78 N N
17 C13 C14 C C sing 1.42 N Y
18 C13 C18 C C doub 1.42 N Y
19 C14 C15 C C doub 1.42 N Y
20 C15 C16 C C sing 1.41 N Y
21 C16 C17 C C doub 1.42 N Y
22 C17 C18 C C sing 1.41 N Y
23 C20 N22 C N sing 1.47 N N
24 C20 C24 C C sing 1.54 N N
25 C20 C38 C C sing 1.56 N N
26 C21 N22 C N sing 1.46 N N
27 S23 C60 S C sing 1.79 N N
28 S23 O76 S O doub 1.44 N N
29 S23 O77 S O doub 1.43 N N
30 C38 N39 C N sing 1.35 N N
31 C38 O41 C O doub 1.23 N N
32 N39 C40 N C sing 1.47 N N
33 C40 C43 C C sing 1.55 N N
34 C40 C47 C C sing 1.55 N N
35 C43 C44 C C sing 1.58 N N
36 C44 C45 C C sing 1.55 N N
37 C45 C46 C C sing 1.55 N N
38 C46 C47 C C sing 1.55 N N
39 C60 C61 C C sing 1.54 N N
40 C61 C64 C C sing 1.53 N N
41 C64 C67 C C sing 1.54 N N
42 C67 C70 C C sing 1.53 N N
43 N2 H2 N H sing 1.0 N N
44 C3 H3 C H sing 1.1 N N
45 C4 H4 C H sing 1.1 N N
46 C5 H5C1 C H sing 1.1 N N
47 C5 H5C2 C H sing 1.1 N N
48 O19 H19 O H sing 0.95 N N
49 C21 H211 C H sing 1.1 N N
50 C21 H212 C H sing 1.1 N N
51 C8 H8 C H sing 1.08 N N
52 C12 H12 C H sing 1.08 N N
53 C9 H9 C H sing 1.08 N N
54 C10 H10 C H sing 1.08 N N
55 C14 H14 C H sing 1.08 N N
56 C18 H18 C H sing 1.08 N N
57 C15 H15 C H sing 1.08 N N
58 C16 H16 C H sing 1.08 N N
59 C17 H17 C H sing 1.08 N N
60 C20 H20 C H sing 1.1 N N
61 N22 H22 N H sing 1.0 N N
62 C24 H241 C H sing 1.1 N N
63 C24 H242 C H sing 1.1 N N
64 C24 H243 C H sing 1.1 N N
65 C60 H601 C H sing 1.1 N N
66 C60 H602 C H sing 1.1 N N
67 N39 H39 N H sing 1.0 N N
68 C40 H40 C H sing 1.1 N N
69 C43 H431 C H sing 1.1 N N
70 C43 H432 C H sing 1.1 N N
71 C47 H471 C H sing 1.1 N N
72 C47 H472 C H sing 1.1 N N
73 C44 H441 C H sing 1.1 N N
74 C44 H442 C H sing 1.1 N N
75 C45 H451 C H sing 1.1 N N
76 C45 H452 C H sing 1.1 N N
77 C46 H461 C H sing 1.1 N N
78 C46 H462 C H sing 1.1 N N
79 C61 H611 C H sing 1.1 N N
80 C61 H612 C H sing 1.1 N N
81 C64 H641 C H sing 1.1 N N
82 C64 H642 C H sing 1.1 N N
83 C67 H671 C H sing 1.1 N N
84 C67 H672 C H sing 1.1 N N
85 C70 H701 C H sing 1.1 N N
86 C70 H702 C H sing 1.1 N N
87 C70 H703 C H sing 1.1 N N