Chemical Components in the PDB

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PDBeChem : Chemical Bonds

 Molecule : VGZ    

Bonds between two atoms of the molecule

Total Number of Bonds: 38


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 C1 O1 C O sing 1.43 N N
2 O1 C2 O C sing 1.36 N N
3 C3 C2 C C doub 1.39 N Y
4 C3 C4 C C sing 1.38 N Y
5 C2 C7 C C sing 1.39 N Y
6 C4 C5 C C doub 1.38 N Y
7 C7 N1 C N sing 1.4 N N
8 C7 C6 C C doub 1.39 N Y
9 C5 C6 C C sing 1.38 N Y
10 N1 C8 N C sing 1.35 N N
11 C10 C11 C C doub 1.38 N Y
12 C10 C9 C C sing 1.4 N Y
13 C8 C9 C C sing 1.47 N N
14 C8 O2 C O doub 1.22 N N
15 C11 C12 C C sing 1.39 N Y
16 C9 C16 C C doub 1.4 N Y
17 C12 N2 C N sing 1.39 N N
18 C12 C15 C C doub 1.39 N Y
19 C14 C13 C C sing 1.51 N N
20 C16 C15 C C sing 1.38 N Y
21 N2 C13 N C sing 1.35 N N
22 C13 O3 C O doub 1.21 N N
23 C5 H1 C H sing 1.08 N N
24 C4 H2 C H sing 1.08 N N
25 C3 H3 C H sing 1.08 N N
26 C1 H4 C H sing 1.09 N N
27 C1 H5 C H sing 1.09 N N
28 C1 H6 C H sing 1.09 N N
29 C6 H7 C H sing 1.08 N N
30 C10 H8 C H sing 1.08 N N
31 C11 H9 C H sing 1.08 N N
32 C14 H10 C H sing 1.09 N N
33 C14 H11 C H sing 1.09 N N
34 C14 H12 C H sing 1.09 N N
35 N1 H13 N H sing 0.97 N N
36 N2 H14 N H sing 0.97 N N
37 C15 H15 C H sing 1.08 N N
38 C16 H16 C H sing 1.08 N N