Chemical Components in the PDB

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PDBeChem : Chemical Bonds

 Molecule : VHG    

Bonds between two atoms of the molecule

Total Number of Bonds: 86


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 O1D CGD O C doub 1.21 N N
2 CGD O2D C O sing 1.34 N N
3 CGD CBD C C sing 1.51 N N
4 CBA CAA C C sing 1.53 N N
5 CBA CGA C C sing 1.51 N N
6 O2A CGA O C doub 1.21 N N
7 CAA C2A C C sing 1.51 N N
8 CAD CBD C C sing 1.53 N N
9 CAD C3D C C sing 1.51 N N
10 CMA C3A C C sing 1.51 N N
11 CGA O1A C O sing 1.34 N N
12 CMD C2D C C sing 1.51 N N
13 C2A C3A C C sing 1.41 N Y
14 C2A C1A C C doub 1.35 N Y
15 C3A C4A C C doub 1.35 N Y
16 C3D C2D C C sing 1.41 N Y
17 C3D C4D C C doub 1.35 N Y
18 C2D C1D C C doub 1.35 N Y
19 NB C4B N C sing 1.35 N N
20 NB C1B N C doub 1.31 N N
21 C1A CHA C C sing 1.51 N N
22 C1A NA C N sing 1.36 N Y
23 C4A CHB C C sing 1.51 N N
24 C4A NA C N sing 1.36 N Y
25 OB C4B O C doub 1.21 N N
26 CHA C4D C C sing 1.51 N N
27 C4D ND C N sing 1.36 N Y
28 CHB C1B C C sing 1.51 N N
29 C4B C3B C C sing 1.51 N N
30 C1B C2B C C sing 1.41 N N
31 C1D ND C N sing 1.36 N Y
32 C1D CHD C C sing 1.51 N N
33 CHD C4C C C sing 1.51 N N
34 C3B C2B C C doub 1.37 N N
35 C3B CAB C C sing 1.42 N N
36 C2B CMB C C sing 1.51 N N
37 C4C NC C N sing 1.38 N N
38 C4C C3C C C doub 1.32 N N
39 NC C1C N C sing 1.35 N N
40 CAC C3C C C sing 1.51 N N
41 CAC CBC C C sing 1.53 N N
42 CAB CBB C C doub 1.34 N N
43 C3C C2C C C sing 1.51 N N
44 C1C C2C C C sing 1.52 N N
45 C1C OC C O doub 1.21 N N
46 C2C CMC C C sing 1.53 N N
47 C2C H1 C H sing 1.09 N N
48 CAA H2 C H sing 1.09 N N
49 CAA H3 C H sing 1.09 N N
50 CAB H4 C H sing 1.08 N N
51 CAC H5 C H sing 1.09 N N
52 CAC H6 C H sing 1.09 N N
53 CAD H7 C H sing 1.09 N N
54 CAD H8 C H sing 1.09 N N
55 CBA H9 C H sing 1.09 N N
56 CBA H10 C H sing 1.09 N N
57 CBB H11 C H sing 1.08 N N
58 CBB H12 C H sing 1.08 N N
59 CBC H13 C H sing 1.09 N N
60 CBC H14 C H sing 1.09 N N
61 CBC H15 C H sing 1.09 N N
62 CBD H16 C H sing 1.09 N N
63 CBD H17 C H sing 1.09 N N
64 CHB H18 C H sing 1.09 N N
65 CHB H19 C H sing 1.09 N N
66 CHD H20 C H sing 1.09 N N
67 CHD H21 C H sing 1.09 N N
68 CMA H22 C H sing 1.09 N N
69 CMA H23 C H sing 1.09 N N
70 CMA H24 C H sing 1.09 N N
71 CMB H25 C H sing 1.09 N N
72 CMB H26 C H sing 1.09 N N
73 CMB H27 C H sing 1.09 N N
74 CMC H28 C H sing 1.09 N N
75 CMC H29 C H sing 1.09 N N
76 CMC H30 C H sing 1.09 N N
77 CMD H31 C H sing 1.09 N N
78 CMD H32 C H sing 1.09 N N
79 CMD H33 C H sing 1.09 N N
80 NA H34 N H sing 0.97 N N
81 NC H35 N H sing 0.97 N N
82 ND H36 N H sing 0.97 N N
83 CHA H37 C H sing 1.09 N N
84 CHA H38 C H sing 1.09 N N
85 O1A H39 O H sing 0.97 N N
86 O2D H40 O H sing 0.97 N N