Chemical Components in the PDB

pdbe.org/chem
wwPDB
EMDataBank
spacer

PDBeChem : Chemical Bonds

 Molecule : VIV    

Bonds between two atoms of the molecule

Total Number of Bonds: 82


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 O1 C4 O C sing 1.36 N N
2 O1 C9 O C sing 1.42 N N
3 O2 C7 O C sing 1.36 N N
4 O2 HO21 O H sing 0.97 N N
5 C1 C23 C C sing 1.53 N N
6 C1 HC11 C H sing 1.09 N N
7 C1 HC12 C H sing 1.09 N N
8 C1 HC13 C H sing 1.09 N N
9 C2 C3 C C doub 1.39 N Y
10 C2 C7 C C sing 1.38 N Y
11 C2 C8 C C sing 1.51 N N
12 C3 C4 C C sing 1.38 N Y
13 C3 C10 C C sing 1.51 N N
14 C4 C5 C C doub 1.4 N Y
15 C5 C6 C C sing 1.38 N Y
16 C5 C12 C C sing 1.51 N N
17 C6 C7 C C doub 1.39 N Y
18 C6 C13 C C sing 1.51 N N
19 C8 HC81 C H sing 1.09 N N
20 C8 HC82 C H sing 1.09 N N
21 C8 HC83 C H sing 1.09 N N
22 C9 C11 C C sing 1.53 N N
23 C9 C14 C C sing 1.53 N N
24 C9 C15 C C sing 1.53 N N
25 C10 C11 C C sing 1.53 N N
26 C10 H101 C H sing 1.09 N N
27 C10 H102 C H sing 1.09 N N
28 C11 H111 C H sing 1.09 N N
29 C11 H112 C H sing 1.09 N N
30 C12 H121 C H sing 1.09 N N
31 C12 H122 C H sing 1.09 N N
32 C12 H123 C H sing 1.09 N N
33 C13 H131 C H sing 1.09 N N
34 C13 H132 C H sing 1.09 N N
35 C13 H133 C H sing 1.09 N N
36 C14 H141 C H sing 1.09 N N
37 C14 H142 C H sing 1.09 N N
38 C14 H143 C H sing 1.09 N N
39 C15 C16 C C sing 1.53 N N
40 C15 H151 C H sing 1.09 N N
41 C15 H152 C H sing 1.09 N N
42 C16 C17 C C sing 1.53 N N
43 C16 H161 C H sing 1.09 N N
44 C16 H162 C H sing 1.09 N N
45 C17 C18 C C sing 1.53 N N
46 C17 H171 C H sing 1.09 N N
47 C17 H172 C H sing 1.09 N N
48 C18 C19 C C sing 1.53 N N
49 C18 C20 C C sing 1.53 N N
50 C18 H18 C H sing 1.09 N N
51 C19 H191 C H sing 1.09 N N
52 C19 H192 C H sing 1.09 N N
53 C19 H193 C H sing 1.09 N N
54 C20 C21 C C sing 1.53 N N
55 C20 H201 C H sing 1.09 N N
56 C20 H202 C H sing 1.09 N N
57 C21 C22 C C sing 1.53 N N
58 C21 H211 C H sing 1.09 N N
59 C21 H212 C H sing 1.09 N N
60 C22 C23 C C sing 1.53 N N
61 C22 H221 C H sing 1.09 N N
62 C22 H222 C H sing 1.09 N N
63 C23 C24 C C sing 1.53 N N
64 C23 H23 C H sing 1.09 N N
65 C24 C25 C C sing 1.53 N N
66 C24 H241 C H sing 1.09 N N
67 C24 H242 C H sing 1.09 N N
68 C25 C26 C C sing 1.53 N N
69 C25 H251 C H sing 1.09 N N
70 C25 H252 C H sing 1.09 N N
71 C26 C27 C C sing 1.53 N N
72 C26 H261 C H sing 1.09 N N
73 C26 H262 C H sing 1.09 N N
74 C27 C28 C C sing 1.53 N N
75 C27 C29 C C sing 1.53 N N
76 C27 H27 C H sing 1.09 N N
77 C28 H281 C H sing 1.09 N N
78 C28 H282 C H sing 1.09 N N
79 C28 H283 C H sing 1.09 N N
80 C29 H291 C H sing 1.09 N N
81 C29 H292 C H sing 1.09 N N
82 C29 H293 C H sing 1.09 N N