Chemical Components in the PDB

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PDBeChem : Chemical Bonds

 Molecule : VL1    

Bonds between two atoms of the molecule

Total Number of Bonds: 91


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 O11 C10 O C doub 1.22 N N
2 C03 N02 C N sing 1.47 N N
3 C06 C05 C C sing 1.53 N N
4 C06 N07 C N sing 1.47 N N
5 C10 N07 C N sing 1.35 N N
6 C10 C12 C C sing 1.48 N N
7 C05 C04 C C sing 1.53 N N
8 C04 N02 C N sing 1.47 N N
9 C04 C09 C C sing 1.53 N N
10 N07 C08 N C sing 1.47 N N
11 C12 C17 C C doub 1.4 N Y
12 C12 C13 C C sing 1.4 N Y
13 N02 C01 N C sing 1.47 N N
14 C17 C16 C C sing 1.38 N Y
15 C09 C08 C C sing 1.53 N N
16 C13 C14 C C doub 1.38 N Y
17 C16 C15 C C doub 1.39 N Y
18 C14 C15 C C sing 1.39 N Y
19 O20 C19 O C doub 1.22 N N
20 C15 N18 C N sing 1.39 N N
21 C45 N40 C N sing 1.47 N N
22 C45 C44 C C sing 1.53 N N
23 N40 C41 N C sing 1.47 N N
24 N40 C30 N C sing 1.38 N N
25 C19 N18 C N sing 1.35 N N
26 C19 N21 C N sing 1.35 N N
27 C23 C24 C C doub 1.38 N Y
28 C23 C22 C C sing 1.39 N Y
29 C41 C42 C C sing 1.53 N N
30 C24 C25 C C sing 1.39 N Y
31 N29 C30 N C doub 1.33 N Y
32 N29 C28 N C sing 1.33 N Y
33 C30 N31 C N sing 1.33 N Y
34 C42 O43 C O sing 1.43 N N
35 C22 N21 C N sing 1.4 N N
36 C22 C27 C C doub 1.39 N Y
37 C25 C28 C C sing 1.48 N N
38 C25 C26 C C doub 1.4 N Y
39 C28 N33 C N doub 1.33 N Y
40 N31 C32 N C doub 1.33 N Y
41 C44 O43 C O sing 1.43 N N
42 C27 C26 C C sing 1.38 N Y
43 N33 C32 N C sing 1.33 N Y
44 C32 N34 C N sing 1.38 N N
45 N34 C39 N C sing 1.47 N N
46 N34 C35 N C sing 1.47 N N
47 C39 C38 C C sing 1.53 N N
48 C35 C36 C C sing 1.53 N N
49 C38 O37 C O sing 1.43 N N
50 C36 O37 C O sing 1.43 N N
51 C13 H131 C H sing 1.08 N N
52 C17 H171 C H sing 1.08 N N
53 C24 H241 C H sing 1.08 N N
54 C26 H261 C H sing 1.08 N N
55 C01 H012 C H sing 1.09 N N
56 C01 H013 C H sing 1.09 N N
57 C01 H011 C H sing 1.09 N N
58 C03 H032 C H sing 1.09 N N
59 C03 H033 C H sing 1.09 N N
60 C03 H031 C H sing 1.09 N N
61 C04 H041 C H sing 1.09 N N
62 C05 H052 C H sing 1.09 N N
63 C05 H051 C H sing 1.09 N N
64 C06 H062 C H sing 1.09 N N
65 C06 H061 C H sing 1.09 N N
66 C08 H082 C H sing 1.09 N N
67 C08 H081 C H sing 1.09 N N
68 C09 H091 C H sing 1.09 N N
69 C09 H092 C H sing 1.09 N N
70 C14 H141 C H sing 1.08 N N
71 C16 H161 C H sing 1.08 N N
72 C23 H231 C H sing 1.08 N N
73 C27 H271 C H sing 1.08 N N
74 C35 H352 C H sing 1.09 N N
75 C35 H351 C H sing 1.09 N N
76 C36 H362 C H sing 1.09 N N
77 C36 H361 C H sing 1.09 N N
78 C38 H382 C H sing 1.09 N N
79 C38 H381 C H sing 1.09 N N
80 C39 H392 C H sing 1.09 N N
81 C39 H391 C H sing 1.09 N N
82 C41 H411 C H sing 1.09 N N
83 C41 H412 C H sing 1.09 N N
84 C42 H421 C H sing 1.09 N N
85 C42 H422 C H sing 1.09 N N
86 C44 H441 C H sing 1.09 N N
87 C44 H442 C H sing 1.09 N N
88 C45 H451 C H sing 1.09 N N
89 C45 H452 C H sing 1.09 N N
90 N18 H181 N H sing 0.97 N N
91 N21 H211 N H sing 0.97 N N