Chemical Components in the PDB

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PDBeChem : Chemical Bonds

 Molecule : VNP    

Bonds between two atoms of the molecule

Total Number of Bonds: 47


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 O2G PG O P sing 1.61 N N
2 O2G H2G O H sing 0.97 N N
3 PG O3G P O doub 1.48 N N
4 PG O1G P O sing 1.61 N N
5 PG N3B P N sing 1.68 N N
6 O1G H1G O H sing 0.97 N N
7 N3B PB N P sing 1.68 N N
8 N3B H3B N H sing 1.01 N N
9 PB O2B P O doub 1.48 N N
10 PB O1B P O sing 1.61 N N
11 PB O1 P O sing 1.61 N N
12 O1B H1B O H sing 0.97 N N
13 O1 C7 O C sing 1.43 N N
14 C7 C12 C C sing 1.53 N N
15 C7 H71 C H sing 1.09 N N
16 C7 H72 C H sing 1.09 N N
17 C12 C11 C C sing 1.51 N N
18 C12 H121 C H sing 1.09 N N
19 C12 H122 C H sing 1.09 N N
20 C11 C10 C C doub 1.34 N Y
21 C11 S1 C S sing 1.76 N Y
22 C10 CM4 C C sing 1.51 N N
23 C10 N5 C N sing 1.32 N Y
24 CM4 HM41 C H sing 1.09 N N
25 CM4 HM42 C H sing 1.09 N N
26 CM4 HM43 C H sing 1.09 N N
27 S1 C9 S C sing 1.71 N Y
28 C9 N5 C N doub 1.29 N Y
29 C9 H9 C H sing 1.08 N N
30 N5 C7A N C sing 1.46 N N
31 C7A C5A C C sing 1.51 N N
32 C7A H7A1 C H sing 1.09 N N
33 C7A H7A2 C H sing 1.09 N N
34 C5A C6A C C doub 1.38 N Y
35 C5A C4A C C sing 1.4 N Y
36 C6A N1A C N sing 1.33 N Y
37 C6A H6A C H sing 1.08 N N
38 N1A C2A N C doub 1.32 N Y
39 C2A CM2 C C sing 1.51 N N
40 C2A N3A C N sing 1.32 N Y
41 CM2 HM21 C H sing 1.09 N N
42 CM2 HM22 C H sing 1.09 N N
43 CM2 HM23 C H sing 1.09 N N
44 N3A C4A N C doub 1.33 N Y
45 C4A N4A C N sing 1.39 N N
46 N4A H4A1 N H sing 0.97 N N
47 N4A H4A2 N H sing 0.97 N N