Chemical Components in the PDB

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PDBeChem : Chemical Bonds

 Molecule : VRK    

Bonds between two atoms of the molecule

Total Number of Bonds: 55


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 C18 C17 C C doub 1.38 N Y
2 C18 C19 C C sing 1.39 N Y
3 C17 C16 C C sing 1.39 N Y
4 C1 N1 C N sing 1.47 N N
5 C1 C2 C C sing 1.53 N N
6 O2 C19 O C sing 1.36 N N
7 C19 C20 C C doub 1.39 N Y
8 C16 C2 C C sing 1.51 N N
9 C16 C15 C C doub 1.38 N Y
10 C2 O1 C O sing 1.43 N N
11 C20 C15 C C sing 1.39 N Y
12 C20 O3 C O sing 1.36 N N
13 C15 C14 C C sing 1.51 N N
14 O1 C3 O C sing 1.43 N N
15 C14 C3 C C sing 1.53 N N
16 C3 C4 C C sing 1.53 N N
17 C12 C4 C C sing 1.53 N N
18 C12 C10 C C sing 1.53 N N
19 C4 C13 C C sing 1.53 N N
20 C4 C5 C C sing 1.53 N N
21 C13 C8 C C sing 1.53 N N
22 C10 C9 C C sing 1.53 N N
23 C10 C11 C C sing 1.53 N N
24 C9 C8 C C sing 1.53 N N
25 C8 C7 C C sing 1.53 N N
26 C5 C6 C C sing 1.53 N N
27 C11 C6 C C sing 1.53 N N
28 C6 C7 C C sing 1.53 N N
29 C1 H1 C H sing 1.09 N N
30 C1 H2 C H sing 1.09 N N
31 O2 H3 O H sing 0.97 N N
32 C5 H4 C H sing 1.09 N N
33 C5 H5 C H sing 1.09 N N
34 C6 H6 C H sing 1.09 N N
35 C7 H7 C H sing 1.09 N N
36 C7 H8 C H sing 1.09 N N
37 C9 H9 C H sing 1.09 N N
38 C9 H10 C H sing 1.09 N N
39 C10 H11 C H sing 1.09 N N
40 C11 H12 C H sing 1.09 N N
41 C11 H13 C H sing 1.09 N N
42 C2 H14 C H sing 1.09 N N
43 C3 H15 C H sing 1.09 N N
44 C8 H16 C H sing 1.09 N N
45 C12 H17 C H sing 1.09 N N
46 C12 H18 C H sing 1.09 N N
47 C13 H19 C H sing 1.09 N N
48 C13 H20 C H sing 1.09 N N
49 C14 H21 C H sing 1.09 N N
50 C14 H22 C H sing 1.09 N N
51 C17 H23 C H sing 1.08 N N
52 C18 H24 C H sing 1.08 N N
53 N1 H25 N H sing 1.01 N N
54 N1 H26 N H sing 1.01 N N
55 O3 H28 O H sing 0.97 N N