Chemical Components in the PDB

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PDBeChem : Chemical Bonds

 Molecule : VSY    

Bonds between two atoms of the molecule

Total Number of Bonds: 41


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 C7 N4 C N doub 1.3 N Y
2 C7 C6 C C sing 1.46 N Y
3 N4 N3 N N sing 1.4 N Y
4 C6 C8 C C doub 1.4 N Y
5 C6 C5 C C sing 1.41 N Y
6 C8 N5 C N sing 1.31 N Y
7 N3 C5 N C sing 1.37 N Y
8 N3 C4 N C sing 1.39 N N
9 C3 C4 C C doub 1.39 N Y
10 C3 C2 C C sing 1.38 N Y
11 C5 C16 C C doub 1.39 N Y
12 C4 N6 C N sing 1.33 N Y
13 C2 N2 C N doub 1.32 N Y
14 N5 C9 N C doub 1.33 N Y
15 C16 C9 C C sing 1.39 N Y
16 N6 C1 N C doub 1.32 N Y
17 N2 C1 N C sing 1.32 N Y
18 C9 C10 C C sing 1.43 N N
19 C1 N1 C N sing 1.38 N N
20 C10 C11 C C trip 1.17 N N
21 C11 C12 C C sing 1.47 N N
22 C13 C12 C C sing 1.53 N N
23 C12 O1 C O sing 1.43 N N
24 C12 C14 C C sing 1.53 N N
25 C14 C15 C C sing 1.53 N N
26 N1 H1 N H sing 0.97 N N
27 N1 H2 N H sing 0.97 N N
28 C7 H3 C H sing 1.08 N N
29 C8 H4 C H sing 1.08 N N
30 C13 H5 C H sing 1.09 N N
31 C13 H6 C H sing 1.09 N N
32 C13 H7 C H sing 1.09 N N
33 C15 H8 C H sing 1.09 N N
34 C15 H9 C H sing 1.09 N N
35 C15 H10 C H sing 1.09 N N
36 C14 H11 C H sing 1.09 N N
37 C14 H12 C H sing 1.09 N N
38 C16 H13 C H sing 1.08 N N
39 C2 H14 C H sing 1.08 N N
40 C3 H15 C H sing 1.08 N N
41 O1 H16 O H sing 0.97 N N