Chemical Components in the PDB

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PDBeChem : Chemical Bonds

 Molecule : X41    

Bonds between two atoms of the molecule

Total Number of Bonds: 97


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 O1 P1 O P sing 1.54 N N
2 O2 P1 O P doub 1.55 N N
3 P1 O3 P O sing 1.61 N N
4 P1 O4 P O sing 1.61 N N
5 O3 H1 O H sing 0.97 N N
6 O4 C1 O C sing 1.43 N N
7 C1 C2 C C sing 1.53 N N
8 C1 H2 C H sing 1.09 N N
9 C1 H3 C H sing 1.09 N N
10 C2 C3 C C sing 1.53 N N
11 C2 O7 C O sing 1.45 N N
12 C2 H4 C H sing 1.09 N N
13 C3 O5 C O sing 1.45 N N
14 C3 H5 C H sing 1.09 N N
15 C3 H6 C H sing 1.09 N N
16 O5 C4 O C sing 1.34 N N
17 C4 O6 C O doub 1.21 N N
18 C4 C5 C C sing 1.51 N N
19 C5 C6 C C sing 1.53 N N
20 C5 H7 C H sing 1.09 N N
21 C5 H8 C H sing 1.09 N N
22 C6 C7 C C sing 1.53 N N
23 C6 H9 C H sing 1.09 N N
24 C6 H10 C H sing 1.09 N N
25 C7 C8 C C sing 1.53 N N
26 C7 H11 C H sing 1.09 N N
27 C7 H12 C H sing 1.09 N N
28 C8 C9 C C sing 1.53 N N
29 C8 H13 C H sing 1.09 N N
30 C8 H14 C H sing 1.09 N N
31 C9 C10 C C sing 1.53 N N
32 C9 H15 C H sing 1.09 N N
33 C9 H16 C H sing 1.09 N N
34 C10 C11 C C sing 1.53 N N
35 C10 H17 C H sing 1.09 N N
36 C10 H18 C H sing 1.09 N N
37 C11 C12 C C sing 1.51 N N
38 C11 H19 C H sing 1.09 N N
39 C11 H20 C H sing 1.09 N N
40 C12 C13 C C doub 1.31 Z N
41 C12 H21 C H sing 1.08 N N
42 C13 C14 C C sing 1.51 N N
43 C13 H22 C H sing 1.08 N N
44 C14 C15 C C sing 1.53 N N
45 C14 H23 C H sing 1.09 N N
46 C14 H24 C H sing 1.09 N N
47 C15 C16 C C sing 1.53 N N
48 C15 H25 C H sing 1.09 N N
49 C15 H26 C H sing 1.09 N N
50 C16 C17 C C sing 1.53 N N
51 C16 H27 C H sing 1.09 N N
52 C16 H28 C H sing 1.09 N N
53 C17 H29 C H sing 1.09 N N
54 C17 H30 C H sing 1.09 N N
55 C17 H31 C H sing 1.09 N N
56 O7 C18 O C sing 1.34 N N
57 C18 O8 C O doub 1.21 N N
58 C18 C19 C C sing 1.51 N N
59 C19 C20 C C sing 1.53 N N
60 C19 H32 C H sing 1.09 N N
61 C19 H33 C H sing 1.09 N N
62 C20 C21 C C sing 1.53 N N
63 C20 H34 C H sing 1.09 N N
64 C20 H35 C H sing 1.09 N N
65 C21 C22 C C sing 1.53 N N
66 C21 H36 C H sing 1.09 N N
67 C21 H37 C H sing 1.09 N N
68 C22 C23 C C sing 1.53 N N
69 C22 H38 C H sing 1.09 N N
70 C22 H39 C H sing 1.09 N N
71 C23 C24 C C sing 1.53 N N
72 C23 H40 C H sing 1.09 N N
73 C23 H41 C H sing 1.09 N N
74 C24 C25 C C sing 1.53 N N
75 C24 H42 C H sing 1.09 N N
76 C24 H43 C H sing 1.09 N N
77 C25 C26 C C sing 1.53 N N
78 C25 H44 C H sing 1.09 N N
79 C25 H45 C H sing 1.09 N N
80 C26 C27 C C sing 1.53 N N
81 C26 H46 C H sing 1.09 N N
82 C26 H47 C H sing 1.09 N N
83 C27 C28 C C sing 1.53 N N
84 C27 H48 C H sing 1.09 N N
85 C27 H49 C H sing 1.09 N N
86 C28 C29 C C sing 1.53 N N
87 C28 H50 C H sing 1.09 N N
88 C28 H51 C H sing 1.09 N N
89 C29 C30 C C sing 1.53 N N
90 C29 H52 C H sing 1.09 N N
91 C29 H53 C H sing 1.09 N N
92 C30 C31 C C sing 1.53 N N
93 C30 H54 C H sing 1.09 N N
94 C30 H55 C H sing 1.09 N N
95 C31 H56 C H sing 1.09 N N
96 C31 H57 C H sing 1.09 N N
97 C31 H58 C H sing 1.09 N N