Chemical Components in the PDB

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PDBeChem : Chemical Bonds

 Molecule : X6I    

Bonds between two atoms of the molecule

Total Number of Bonds: 45


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 O5 C12 O C doub 1.21 N N
2 N3 C11 N C sing 1.47 N N
3 C12 C11 C C sing 1.51 N N
4 C12 O6 C O sing 1.34 N N
5 C11 C10 C C sing 1.53 N N
6 C10 S1 C S sing 1.81 N N
7 S1 C9 S C sing 1.81 N N
8 C9 C8 C C sing 1.53 N N
9 C8 N2 C N sing 1.46 N N
10 N2 C7 N C doub 1.29 N N
11 O7 C13 O C sing 1.36 N N
12 C7 C6 C C sing 1.48 N N
13 C13 C6 C C doub 1.4 N Y
14 C13 C2 C C sing 1.39 N Y
15 C1 C2 C C sing 1.51 N N
16 C6 C4 C C sing 1.4 N Y
17 C2 N1 C N doub 1.32 N Y
18 C4 C5 C C sing 1.51 N N
19 C4 C3 C C doub 1.38 N Y
20 C5 O1 C O sing 1.43 N N
21 N1 C3 N C sing 1.32 N Y
22 O1 P1 O P sing 1.61 N N
23 O4 P1 O P doub 1.48 N N
24 P1 O3 P O sing 1.61 N N
25 P1 O2 P O sing 1.61 N N
26 C1 H3 C H sing 1.09 N N
27 C1 H2 C H sing 1.09 N N
28 C1 H1 C H sing 1.09 N N
29 C10 H12 C H sing 1.09 N N
30 C10 H13 C H sing 1.09 N N
31 C11 H14 C H sing 1.09 N N
32 C3 H4 C H sing 1.08 N N
33 C5 H5 C H sing 1.09 N N
34 C5 H6 C H sing 1.09 N N
35 C7 H7 C H sing 1.08 N N
36 C8 H9 C H sing 1.09 N N
37 C8 H8 C H sing 1.09 N N
38 C9 H11 C H sing 1.09 N N
39 C9 H10 C H sing 1.09 N N
40 N3 H17 N H sing 1.01 N N
41 N3 H15 N H sing 1.01 N N
42 O2 H22 O H sing 0.97 N N
43 O3 H23 O H sing 0.97 N N
44 O6 H24 O H sing 0.97 N N
45 O7 H18 O H sing 0.97 N N