Chemical Components in the PDB

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PDBeChem : Chemical Bonds

 Molecule : X99    

Bonds between two atoms of the molecule

Total Number of Bonds: 53


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 C C1 C C sing 1.51 N N
2 O C O C doub 1.21 N N
3 C1 H1 C H sing 1.09 N N
4 C1 H1A C H sing 1.09 N N
5 C2 C1 C C sing 1.53 N N
6 C2 N3 C N sing 1.46 N N
7 C2 H2 C H sing 1.09 N N
8 C2 H2A C H sing 1.09 N N
9 N3 C4 N C sing 1.35 N N
10 N3 C5 N C sing 1.35 N N
11 C4 C8 C C sing 1.48 N N
12 C5 C13 C C sing 1.48 N N
13 O6 C4 O C doub 1.21 N N
14 O7 C5 O C doub 1.21 N N
15 C8 C13 C C doub 1.41 N Y
16 C8 C9 C C sing 1.39 N Y
17 C9 C10 C C doub 1.39 N Y
18 C9 H9 C H sing 1.08 N N
19 C10 C11 C C sing 1.38 N Y
20 C10 H10 C H sing 1.08 N N
21 C11 H11 C H sing 1.08 N N
22 C12 C11 C C doub 1.39 N Y
23 C12 H12 C H sing 1.08 N N
24 C13 C12 C C sing 1.39 N Y
25 N CD N C sing 1.47 N N
26 CD HD C H sing 1.09 N N
27 CD HDA C H sing 1.09 N N
28 CA N C N sing 1.47 N N
29 CA CB C C sing 1.54 N N
30 CA HA C H sing 1.09 N N
31 CB CG C C sing 1.55 N N
32 CB HB C H sing 1.09 N N
33 CB HBA C H sing 1.09 N N
34 CG CD C C sing 1.55 N N
35 CG F1 C F sing 1.4 N N
36 C3 CA C C sing 1.51 N N
37 C3 O1 C O doub 1.21 N N
38 F2 CG F C sing 1.4 N N
39 N1 CD1 N C sing 1.47 N N
40 N1 CA1 N C sing 1.47 N N
41 CD1 CG1 C C sing 1.54 N N
42 CA1 CB1 C C sing 1.55 N N
43 CB1 CG1 C C sing 1.55 N N
44 CD1 HD1 C H sing 1.09 N N
45 CD1 HDA1 C H sing 1.09 N N
46 CA1 HA1 C H sing 1.09 N N
47 CA1 HAA C H sing 1.09 N N
48 CB1 HB1 C H sing 1.09 N N
49 CB1 HBA1 C H sing 1.09 N N
50 CG1 HG C H sing 1.09 N N
51 CG1 HGA C H sing 1.09 N N
52 C N C N sing 1.35 N N
53 C3 N1 C N sing 1.35 N N