Chemical Components in the PDB

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PDBeChem : Chemical Bonds

 Molecule : XDA    

Bonds between two atoms of the molecule

Total Number of Bonds: 61


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 C11 N9 C N sing 1.47 N N
2 O8 C7 O C doub 1.21 N N
3 N9 C7 N C sing 1.35 N N
4 N9 C10 N C sing 1.46 N N
5 C7 C4 C C sing 1.51 N N
6 O15 C16 O C sing 1.45 N N
7 O15 C13 O C sing 1.35 N N
8 C16 C17 C C sing 1.51 N N
9 N12 C13 N C sing 1.35 N N
10 N12 C3 N C sing 1.47 N N
11 C2 C1 C C doub 1.29 N N
12 C2 C3 C C sing 1.5 N N
13 C22 C17 C C doub 1.38 N Y
14 C22 C21 C C sing 1.38 N Y
15 C1 C6 C C sing 1.5 N N
16 C4 C3 C C sing 1.53 N N
17 C4 C5 C C sing 1.53 N N
18 C13 O14 C O doub 1.22 N N
19 C17 C18 C C sing 1.38 N Y
20 C5 C6 C C sing 1.53 N N
21 C21 C20 C C doub 1.4 N Y
22 O32 P29 O P doub 1.48 N N
23 C18 C19 C C doub 1.38 N Y
24 C20 C19 C C sing 1.4 N Y
25 C20 C23 C C sing 1.48 N N
26 P29 O31 P O sing 1.61 N N
27 P29 O28 P O sing 1.61 N N
28 P29 O30 P O sing 1.61 N N
29 O24 C23 O C doub 1.22 N N
30 C23 N25 C N sing 1.35 N N
31 O28 C27 O C sing 1.43 N N
32 N25 C26 N C sing 1.47 N N
33 C26 C27 C C sing 1.53 N N
34 C11 H11B C H sing 1.09 N N
35 C11 H11A C H sing 1.09 N N
36 C11 H11C C H sing 1.09 N N
37 C10 H10C C H sing 1.09 N N
38 C10 H10B C H sing 1.09 N N
39 C10 H10A C H sing 1.09 N N
40 C4 H4 C H sing 1.09 N N
41 C5 H5A C H sing 1.09 N N
42 C5 H5B C H sing 1.09 N N
43 C6 H6B C H sing 1.09 N N
44 C6 H6A C H sing 1.09 N N
45 C1 H1 C H sing 1.08 N N
46 C2 H2 C H sing 1.08 N N
47 C3 H3 C H sing 1.09 N N
48 N12 H12 N H sing 0.97 N N
49 C16 H16A C H sing 1.09 N N
50 C16 H16B C H sing 1.09 N N
51 C22 H22 C H sing 1.08 N N
52 C21 H21 C H sing 1.08 N N
53 C18 H18 C H sing 1.08 N N
54 C19 H19 C H sing 1.08 N N
55 N25 H25 N H sing 0.97 N N
56 C26 H26A C H sing 1.09 N N
57 C26 H26B C H sing 1.09 N N
58 C27 H27A C H sing 1.09 N N
59 C27 H27B C H sing 1.09 N N
60 O31 H5 O H sing 0.97 N N
61 O30 H6 O H sing 0.97 N N