Chemical Components in the PDB

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PDBeChem : Chemical Bonds

 Molecule : XJH    

Bonds between two atoms of the molecule

Total Number of Bonds: 53


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 C02 N01 C N doub 1.32 N Y
2 C06 N01 C N sing 1.32 N Y
3 C03 C02 C C sing 1.39 N Y
4 C02 N02 C N sing 1.39 N N
5 N02 HN02 N H sing 0.97 N N
6 N02 HN0A N H sing 0.97 N N
7 C04 C03 C C doub 1.38 N Y
8 C03 H03 C H sing 1.08 N N
9 C04 C05 C C sing 1.39 N Y
10 C04 H04 C H sing 1.08 N N
11 C05 C06 C C doub 1.38 N Y
12 C05 H05 C H sing 1.08 N N
13 C06 C07 C C sing 1.51 N N
14 C07 C3' C C sing 1.53 N N
15 C07 H07 C H sing 1.09 N N
16 C07 H07A C H sing 1.09 N N
17 C2' N1' C N sing 1.48 N N
18 N1' C5' N C sing 1.49 N N
19 N1' HN1' N H sing 1.01 N N
20 O10 C4' O C sing 1.43 N N
21 O10 C11 O C sing 1.36 N N
22 C12 C11 C C doub 1.39 N Y
23 C11 C16 C C sing 1.39 N Y
24 C12 C13 C C sing 1.38 N Y
25 C12 H12 C H sing 1.08 N N
26 C13 C14 C C doub 1.38 N Y
27 C13 H13 C H sing 1.08 N N
28 C14 C15 C C sing 1.39 N Y
29 C14 H14 C H sing 1.08 N N
30 C16 C15 C C doub 1.39 N Y
31 C15 O20 C O sing 1.36 N N
32 C16 H16 C H sing 1.08 N N
33 C2' C3' C C sing 1.54 N N
34 C2' H2' C H sing 1.09 N N
35 C2' H2'A C H sing 1.09 N N
36 O20 C21 O C sing 1.36 N N
37 C26 C21 C C doub 1.39 N Y
38 C21 C22 C C sing 1.39 N Y
39 C23 C22 C C doub 1.38 N Y
40 C22 H22 C H sing 1.08 N N
41 C24 C23 C C sing 1.38 N Y
42 C23 H23 C H sing 1.08 N N
43 C25 C24 C C doub 1.38 N Y
44 C24 H24 C H sing 1.08 N N
45 C25 C26 C C sing 1.38 N Y
46 C25 H25 C H sing 1.08 N N
47 C26 H26 C H sing 1.08 N N
48 C3' C4' C C sing 1.54 N N
49 C3' H3' C H sing 1.09 N N
50 C5' C4' C C sing 1.54 N N
51 C4' H4' C H sing 1.09 N N
52 C5' H5' C H sing 1.09 N N
53 C5' H5'A C H sing 1.09 N N