Chemical Components in the PDB

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PDBeChem : Chemical Bonds

 Molecule : XJS    

Bonds between two atoms of the molecule

Total Number of Bonds: 133


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 C1 C5 C C sing 1.43 N N
2 N1 C2 N C sing 1.34 N N
3 P1 O1 P O sing 1.61 N N
4 P1 O5' P O sing 1.61 N N
5 P1 O10 P O sing 1.61 N N
6 C2 O2 C O doub 1.22 N N
7 C2 N3 C N sing 1.35 N N
8 N2 C8 N C sing 1.35 N N
9 N2 HN2 N H sing 0.97 N N
10 P2 O1 P O sing 1.61 N N
11 P2 O8 P O sing 1.61 N N
12 C3 C1 C C trip 1.17 N N
13 N3 HN3 N H sing 0.97 N N
14 O3 P2 O P sing 1.61 N N
15 P3 O3 P O sing 1.61 N N
16 P3 O7 P O sing 1.61 N N
17 C4 N3 C N sing 1.35 N N
18 C4 O4 C O doub 1.22 N N
19 N4 C13 N C sing 1.46 N N
20 N4 C12 N C sing 1.46 N N
21 C5 C4 C C sing 1.47 N N
22 N5 C18 N C sing 1.35 N N
23 N5 C15 N C sing 1.47 N N
24 N5 HN5 N H sing 0.97 N N
25 O5 P3 O P doub 1.48 N N
26 C6 N1 C N sing 1.37 N N
27 C6 C5 C C doub 1.37 N N
28 C6 H6 C H sing 1.08 N N
29 N6 HN6 N H sing 0.97 N N
30 O6 P3 O P sing 1.61 N N
31 O6 HO6 O H sing 0.97 N N
32 C7 N2 C N sing 1.46 N N
33 C7 C3 C C sing 1.47 N N
34 C7 H7 C H sing 1.09 N N
35 C7 H7A C H sing 1.09 N N
36 N7 C31 N C sing 1.46 N N
37 N7 C30 N C sing 1.47 N N
38 O7 HO7 O H sing 0.97 N N
39 C8 C9 C C sing 1.51 N N
40 C8 O13 C O doub 1.21 N N
41 N8 C24 N C sing 1.35 N N
42 O8 HO8 O H sing 0.97 N N
43 C9 C10 C C sing 1.53 N N
44 C9 H9 C H sing 1.09 N N
45 C9 H9A C H sing 1.09 N N
46 O9 P2 O P doub 1.48 N N
47 C1' N1 C N sing 1.47 N N
48 C1' H1' C H sing 1.09 N N
49 C10 C11 C C sing 1.51 N N
50 C10 H10 C H sing 1.09 N N
51 C10 H10A C H sing 1.09 N N
52 O10 HO10 O H sing 0.97 N N
53 C11 N4 C N sing 1.35 N N
54 O11 P1 O P doub 1.48 N N
55 C12 C14 C C sing 1.53 N N
56 C12 H12 C H sing 1.09 N N
57 O12 C3' O C sing 1.43 N N
58 O12 HO12 O H sing 0.97 N N
59 C13 C16 C C sing 1.53 N N
60 C13 H13 C H sing 1.09 N N
61 C13 H13A C H sing 1.09 N N
62 C14 C15 C C sing 1.53 N N
63 C14 H14 C H sing 1.09 N N
64 O14 C11 O C doub 1.21 N N
65 C15 H15 C H sing 1.09 N N
66 C15 H15A C H sing 1.09 N N
67 C16 C17 C C sing 1.53 N N
68 C16 H16 C H sing 1.09 N N
69 C16 H16A C H sing 1.09 N N
70 O16 C19 O C doub 1.21 N N
71 C17 N6 C N sing 1.47 N N
72 C17 H17 C H sing 1.09 N N
73 C17 H17A C H sing 1.09 N N
74 C18 O15 C O doub 1.21 N N
75 C18 C20 C C sing 1.51 N N
76 O18 C25 O C doub 1.21 N N
77 C19 N6 C N sing 1.35 N N
78 C19 C21 C C sing 1.51 N N
79 C2' C1' C C sing 1.54 N N
80 C2' H2' C H sing 1.09 N N
81 C2' H2'A C H sing 1.09 N N
82 C20 C22 C C sing 1.53 N N
83 C20 H20 C H sing 1.09 N N
84 C20 H20A C H sing 1.09 N N
85 C21 H21 C H sing 1.09 N N
86 C21 H21A C H sing 1.09 N N
87 C22 C25 C C sing 1.51 N N
88 C22 H22 C H sing 1.09 N N
89 C22 H22A C H sing 1.09 N N
90 C23 C21 C C sing 1.53 N N
91 C23 H23 C H sing 1.09 N N
92 C23 H23A C H sing 1.09 N N
93 C24 O17 C O doub 1.21 N N
94 C24 C23 C C sing 1.51 N N
95 C25 N7 C N sing 1.35 N N
96 C26 N8 C N sing 1.46 N N
97 C26 H26 C H sing 1.09 N N
98 C27 C26 C C sing 1.53 N N
99 C27 H27 C H sing 1.09 N N
100 C27 H27A C H sing 1.09 N N
101 C28 N8 C N sing 1.46 N N
102 C28 C29 C C sing 1.53 N N
103 C28 H28 C H sing 1.09 N N
104 C29 H29 C H sing 1.09 N N
105 C29 H29A C H sing 1.09 N N
106 C3' C2' C C sing 1.55 N N
107 C3' H3' C H sing 1.09 N N
108 C30 C32 C C sing 1.53 N N
109 C30 H30 C H sing 1.09 N N
110 C31 H31 C H sing 1.09 N N
111 C32 H32 C H sing 1.09 N N
112 C32 H32A C H sing 1.09 N N
113 C33 C31 C C sing 1.53 N N
114 C33 H33 C H sing 1.09 N N
115 C33 H33A C H sing 1.09 N N
116 C4' C3' C C sing 1.55 N N
117 C4' O4' C O sing 1.45 N N
118 C4' H4' C H sing 1.09 N N
119 O4' C1' O C sing 1.44 N N
120 C5' C4' C C sing 1.53 N N
121 C5' O5' C O sing 1.43 N N
122 C5' H5' C H sing 1.09 N N
123 C5' H5'A C H sing 1.09 N N
124 C12 H54 C H sing 1.09 N N
125 C14 H55 C H sing 1.09 N N
126 C26 H56 C H sing 1.09 N N
127 C27 H57 C H sing 1.09 N N
128 C28 H58 C H sing 1.09 N N
129 C29 H59 C H sing 1.09 N N
130 C30 H60 C H sing 1.09 N N
131 C31 H61 C H sing 1.09 N N
132 C32 H62 C H sing 1.09 N N
133 C33 H63 C H sing 1.09 N N