Chemical Components in the PDB

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PDBeChem : Chemical Bonds

 Molecule : XPN    

Bonds between two atoms of the molecule

Total Number of Bonds: 34


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 O3 P O P doub 1.48 N N
2 O1 P O P sing 1.61 N N
3 P O2 P O sing 1.61 N N
4 P O4 P O sing 1.61 N N
5 C6 C5 C C doub 1.39 N Y
6 C6 C7 C C sing 1.38 N Y
7 C5 C4 C C sing 1.38 N Y
8 C7 C8 C C doub 1.39 N Y
9 C4 O4 C O sing 1.36 N N
10 C4 C9 C C doub 1.4 N Y
11 C8 C9 C C sing 1.41 N Y
12 C8 N1 C N sing 1.38 N Y
13 C9 C3 C C sing 1.47 N Y
14 N1 C2 N C sing 1.37 N Y
15 C3 C2 C C doub 1.34 N Y
16 C3 CB C C sing 1.51 N N
17 CB CA C C sing 1.53 N N
18 CM N C N sing 1.47 N N
19 CA N C N sing 1.47 N N
20 O1 H3 O H sing 0.97 N N
21 C5 H5 C H sing 1.08 N N
22 C6 H6 C H sing 1.08 N N
23 C7 H7 C H sing 1.08 N N
24 N HN N H sing 1.01 N N
25 CA HA1 C H sing 1.09 N N
26 CA HA2 C H sing 1.09 N N
27 CB HB1 C H sing 1.09 N N
28 CB HB2 C H sing 1.09 N N
29 C2 H2 C H sing 1.08 N N
30 CM HM2 C H sing 1.09 N N
31 CM HM1 C H sing 1.09 N N
32 CM HM3 C H sing 1.09 N N
33 N1 H1 N H sing 0.97 N N
34 O2 H8 O H sing 0.97 N N