Chemical Components in the PDB

pdbe.org/chem
wwPDB
EMDataBank
spacer

PDBeChem : Chemical Bonds

 Molecule : XT9    

Bonds between two atoms of the molecule

Total Number of Bonds: 54


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 O51 C32 O C sing 1.42 N N
2 O51 C50 O C sing 1.37 N N
3 O49 C48 O C sing 1.36 N N
4 C29 N28 C N sing 1.47 N N
5 C29 C32 C C sing 1.5 N N
6 C29 C30 C C sing 1.54 N N
7 C32 C33 C C sing 1.54 N N
8 C30 C31 C C sing 1.53 N N
9 C50 C48 C C doub 1.39 N Y
10 C50 C44 C C sing 1.39 N Y
11 C48 C47 C C sing 1.4 N Y
12 C33 C38 C C sing 1.52 N N
13 C33 C44 C C sing 1.48 N N
14 C33 C34 C C sing 1.53 N N
15 C38 C39 C C sing 1.54 N N
16 C44 C45 C C doub 1.38 N Y
17 C47 C46 C C doub 1.39 N Y
18 C31 C34 C C sing 1.53 N N
19 C34 O35 C O sing 1.43 N N
20 C34 C36 C C sing 1.53 N N
21 C45 C46 C C sing 1.38 N Y
22 C45 C37 C C sing 1.49 N N
23 C39 N40 C N sing 1.47 N N
24 N40 C36 N C sing 1.47 N N
25 N40 C41 N C sing 1.47 N N
26 C36 C37 C C sing 1.53 N N
27 C42 C41 C C sing 1.53 N N
28 C42 C43 C C sing 1.53 N N
29 C29 H1 C H sing 1.09 N N
30 C30 H2 C H sing 1.09 N N
31 C30 H3 C H sing 1.09 N N
32 C31 H4 C H sing 1.09 N N
33 C31 H5 C H sing 1.09 N N
34 C32 H6 C H sing 1.09 N N
35 C36 H7 C H sing 1.09 N N
36 C37 H8 C H sing 1.09 N N
37 C37 H9 C H sing 1.09 N N
38 C38 H10 C H sing 1.09 N N
39 C38 H11 C H sing 1.09 N N
40 C39 H12 C H sing 1.09 N N
41 C39 H13 C H sing 1.09 N N
42 C41 H14 C H sing 1.09 N N
43 C41 H15 C H sing 1.09 N N
44 C42 H16 C H sing 1.09 N N
45 C42 H17 C H sing 1.09 N N
46 C43 H18 C H sing 1.09 N N
47 C43 H19 C H sing 1.09 N N
48 C43 H20 C H sing 1.09 N N
49 C46 H21 C H sing 1.08 N N
50 C47 H22 C H sing 1.08 N N
51 N28 H23 N H sing 1.01 N N
52 N28 H24 N H sing 1.01 N N
53 O35 H27 O H sing 0.97 N N
54 O49 H28 O H sing 0.97 N N