Chemical Components in the PDB

pdbe.org/chem
wwPDB
EMDataBank
spacer

PDBeChem : Chemical Bonds

 Molecule : XU9    

Bonds between two atoms of the molecule

Total Number of Bonds: 35


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 N1 C5 N C doub 1.31 N Y
2 N1 N N N sing 1.4 N Y
3 C5 C3 C C sing 1.41 N Y
4 N C6 N C sing 1.36 N Y
5 N C4 N C sing 1.37 N Y
6 C6 C7 C C doub 1.35 N Y
7 C3 C4 C C doub 1.41 N Y
8 C3 C C C sing 1.47 N N
9 O C O C doub 1.22 N N
10 C4 C9 C C sing 1.41 N Y
11 C7 C8 C C sing 1.4 N Y
12 C O1 C O sing 1.35 N N
13 C9 C8 C C doub 1.39 N Y
14 C9 C10 C C sing 1.43 N N
15 O1 C1 O C sing 1.45 N N
16 C10 C11 C C trip 1.17 N N
17 C1 C2 C C sing 1.53 N N
18 C11 C12 C C sing 1.47 N N
19 C14 C12 C C sing 1.53 N N
20 C14 C13 C C sing 1.53 N N
21 C12 C13 C C sing 1.53 N N
22 C1 H1 C H sing 1.09 N N
23 C1 H2 C H sing 1.09 N N
24 C2 H3 C H sing 1.09 N N
25 C2 H4 C H sing 1.09 N N
26 C2 H5 C H sing 1.09 N N
27 C5 H6 C H sing 1.08 N N
28 C6 H7 C H sing 1.08 N N
29 C8 H8 C H sing 1.08 N N
30 C12 H9 C H sing 1.09 N N
31 C13 H10 C H sing 1.09 N N
32 C13 H11 C H sing 1.09 N N
33 C14 H12 C H sing 1.09 N N
34 C14 H13 C H sing 1.09 N N
35 C7 H14 C H sing 1.08 N N