Chemical Components in the PDB

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PDBeChem : Chemical Bonds

 Molecule : XX5    

Bonds between two atoms of the molecule

Total Number of Bonds: 52


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 O1 C2 O C doub 1.23 N N
2 C2 O3 C O sing 1.36 N N
3 C2 C4 C C sing 1.52 N N
4 C4 C5 C C sing 1.54 N N
5 C4 N9 C N sing 1.44 N N
6 C4 HC4 C H sing 1.1 N N
7 C5 C6 C C sing 1.55 N N
8 C5 HC51 C H sing 1.1 N N
9 C5 HC52 C H sing 1.1 N N
10 C6 C7 C C sing 1.53 N N
11 C6 C8 C C sing 1.53 N N
12 C6 HC6 C H sing 1.1 N N
13 C7 HC71 C H sing 1.09 N N
14 C7 HC72 C H sing 1.1 N N
15 C7 HC73 C H sing 1.1 N N
16 C8 HC81 C H sing 1.1 N N
17 C8 HC82 C H sing 1.09 N N
18 C8 HC83 C H sing 1.1 N N
19 N9 C10 N C sing 1.46 N N
20 N9 HN9 N H sing 1.03 N N
21 C10 C11 C C sing 1.52 N N
22 C10 C14 C C sing 1.53 N N
23 C10 H10 C H sing 1.1 N N
24 C11 O12 C O sing 1.35 N N
25 C11 O13 C O doub 1.23 N N
26 O12 H12 O H sing 0.98 N N
27 C14 C15 C C sing 1.51 N N
28 C14 H141 C H sing 1.1 N N
29 C14 H142 C H sing 1.1 N N
30 C15 C16 C C doub 1.35 N Y
31 C15 N19 C N sing 1.35 N Y
32 C16 N17 C N sing 1.37 N Y
33 C16 H16 C H sing 1.08 N N
34 N17 C18 N C doub 1.31 N Y
35 C18 N19 C N sing 1.37 N Y
36 C18 H18 C H sing 1.08 N N
37 N19 C20 N C sing 1.44 N N
38 C20 C21 C C sing 1.5 N N
39 C20 H201 C H sing 1.1 N N
40 C20 H202 C H sing 1.1 N N
41 C21 C22 C C doub 1.39 N Y
42 C21 C26 C C sing 1.39 N Y
43 C22 C23 C C sing 1.4 N Y
44 C22 H22 C H sing 1.09 N N
45 C23 CL24 C CL sing 1.72 N N
46 C23 C25 C C doub 1.39 N Y
47 C25 C27 C C sing 1.4 N Y
48 C25 H25 C H sing 1.09 N N
49 C26 C27 C C doub 1.39 N Y
50 C26 H26 C H sing 1.09 N N
51 C27 CL28 C CL sing 1.72 N N
52 HO1 O3 H O sing 0.98 N N