Chemical Components in the PDB

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PDBeChem : Chemical Bonds

 Molecule : Y10    

Bonds between two atoms of the molecule

Total Number of Bonds: 59


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 C12 N C N sing 1.46 N N
2 N C11 N C sing 1.35 N N
3 N HN N H sing 0.97 N N
4 C04 O1 C O sing 1.43 N N
5 O1 HO1 O H sing 0.97 N N
6 C06 O2 C O sing 1.43 N N
7 O2 HO2 O H sing 0.97 N N
8 C05 O3 C O sing 1.43 N N
9 O3 HO3 O H sing 0.97 N N
10 O4 C11 O C doub 1.21 N N
11 C07 O5 C O sing 1.43 N N
12 O5 C21 O C sing 1.43 N N
13 C09 C01 C C sing 1.53 N N
14 C10 C01 C C sing 1.53 N N
15 C01 C08 C C sing 1.53 N N
16 C01 C02 C C sing 1.51 N N
17 C02 C03 C C doub 1.31 E N
18 C02 H02 C H sing 1.08 N N
19 C03 C04 C C sing 1.51 N N
20 C03 H03 C H sing 1.08 N N
21 C04 C05 C C sing 1.53 N N
22 C04 H04 C H sing 1.09 N N
23 C06 C05 C C sing 1.53 N N
24 C05 H05 C H sing 1.09 N N
25 C07 C06 C C sing 1.53 N N
26 C06 H06 C H sing 1.09 N N
27 C11 C07 C C sing 1.51 N N
28 C07 H07 C H sing 1.09 N N
29 C08 H08 C H sing 1.09 N N
30 C08 H08A C H sing 1.09 N N
31 C08 H08B C H sing 1.09 N N
32 C09 H09 C H sing 1.09 N N
33 C09 H09A C H sing 1.09 N N
34 C09 H09B C H sing 1.09 N N
35 C10 H10 C H sing 1.09 N N
36 C10 H10A C H sing 1.09 N N
37 C10 H10B C H sing 1.09 N N
38 C16 C12 C C sing 1.54 N N
39 C12 C13 C C sing 1.54 N N
40 C12 H12 C H sing 1.09 N N
41 C14 C13 C C sing 1.51 N N
42 C13 H13 C H sing 1.09 N N
43 C13 H13A C H sing 1.09 N N
44 C15 C14 C C doub 1.38 N Y
45 C17 C14 C C sing 1.38 N Y
46 C20 C15 C C sing 1.39 N Y
47 C15 C16 C C sing 1.51 N N
48 C16 H16 C H sing 1.09 N N
49 C16 H16A C H sing 1.09 N N
50 C18 C17 C C doub 1.38 N Y
51 C17 H17 C H sing 1.08 N N
52 C19 C18 C C sing 1.38 N Y
53 C18 H18 C H sing 1.08 N N
54 C19 C20 C C doub 1.38 N Y
55 C19 H19 C H sing 1.08 N N
56 C20 H20 C H sing 1.08 N N
57 C21 H21 C H sing 1.09 N N
58 C21 H21A C H sing 1.09 N N
59 C21 H21B C H sing 1.09 N N