Chemical Components in the PDB

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PDBeChem : Chemical Bonds

 Molecule : Y1P    

Bonds between two atoms of the molecule

Total Number of Bonds: 40


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 C O C O sing 1.43 N N
2 O C1 O C sing 1.43 N N
3 C1 C2 C C sing 1.53 N N
4 C2 N C N sing 1.47 N N
5 N C3 N C sing 1.35 N N
6 O1 C3 O C doub 1.22 N N
7 C3 N1 C N sing 1.35 N N
8 N1 C4 N C sing 1.47 N N
9 C4 C5 C C sing 1.53 N N
10 C5 N2 C N sing 1.47 N N
11 N2 C6 N C sing 1.35 N N
12 C6 O2 C O doub 1.22 N N
13 C7 C6 C C sing 1.47 N N
14 C7 C8 C C doub 1.37 N Y
15 C8 C9 C C sing 1.4 N Y
16 C9 C10 C C doub 1.35 N Y
17 C10 O3 C O sing 1.34 N Y
18 O3 C7 O C sing 1.35 N Y
19 C11 N2 C N sing 1.47 N N
20 C12 C11 C C sing 1.53 N N
21 N1 C12 N C sing 1.47 N N
22 C4 H8 C H sing 1.09 N N
23 C4 H9 C H sing 1.09 N N
24 C5 H11 C H sing 1.09 N N
25 C5 H10 C H sing 1.09 N N
26 C8 H12 C H sing 1.08 N N
27 C10 H14 C H sing 1.08 N N
28 N H7 N H sing 0.97 N N
29 C H C H sing 1.09 N N
30 C H1 C H sing 1.09 N N
31 C H2 C H sing 1.09 N N
32 C1 H4 C H sing 1.09 N N
33 C1 H3 C H sing 1.09 N N
34 C11 H15 C H sing 1.09 N N
35 C11 H16 C H sing 1.09 N N
36 C12 H18 C H sing 1.09 N N
37 C12 H17 C H sing 1.09 N N
38 C2 H6 C H sing 1.09 N N
39 C2 H5 C H sing 1.09 N N
40 C9 H13 C H sing 1.08 N N