Chemical Components in the PDB

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PDBeChem : Chemical Bonds

 Molecule : Y54    

Bonds between two atoms of the molecule

Total Number of Bonds: 76


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 C01 C02 C C sing 1.53 N N
2 C02 N03 C N sing 1.46 N N
3 C02 C18 C C sing 1.51 N N
4 N03 C04 N C sing 1.35 N N
5 C19 C18 C C doub 1.38 N Y
6 C19 C20 C C sing 1.38 N Y
7 C18 C36 C C sing 1.38 N Y
8 C32 O33 C O sing 1.43 N N
9 C32 C31 C C sing 1.55 N N
10 C32 C34 C C sing 1.55 N N
11 C07 C06 C C sing 1.51 N N
12 C31 C30 C C sing 1.54 N N
13 C04 C05 C C sing 1.48 N N
14 C04 O17 C O doub 1.22 N N
15 C20 C21 C C doub 1.38 N Y
16 C36 C22 C C doub 1.4 N Y
17 N14 C15 N C sing 1.48 N N
18 N14 C13 N C sing 1.48 N N
19 C06 C05 C C doub 1.4 N Y
20 C06 C08 C C sing 1.38 N Y
21 C05 C16 C C sing 1.39 N Y
22 C30 C29 C C sing 1.54 N N
23 C08 C09 C C doub 1.38 N Y
24 C15 C12 C C sing 1.54 N N
25 C16 C10 C C doub 1.39 N Y
26 C21 C22 C C sing 1.4 N Y
27 C34 C29 C C sing 1.55 N N
28 C22 C23 C C sing 1.48 N N
29 C09 C10 C C sing 1.39 N Y
30 C10 N11 C N sing 1.4 N N
31 C29 N28 C N sing 1.47 N N
32 C13 C12 C C sing 1.54 N N
33 N11 C12 N C sing 1.47 N N
34 C23 S35 C S sing 1.76 N Y
35 C23 C24 C C doub 1.35 N Y
36 S35 C26 S C sing 1.76 N Y
37 C24 C25 C C sing 1.38 N Y
38 N28 C27 N C sing 1.47 N N
39 C26 C27 C C sing 1.51 N N
40 C26 C25 C C doub 1.34 N Y
41 C01 H1 C H sing 1.09 N N
42 C01 H2 C H sing 1.09 N N
43 C01 H3 C H sing 1.09 N N
44 C02 H4 C H sing 1.09 N N
45 N03 H5 N H sing 0.97 N N
46 C07 H6 C H sing 1.09 N N
47 C07 H7 C H sing 1.09 N N
48 C07 H8 C H sing 1.09 N N
49 C08 H9 C H sing 1.08 N N
50 C09 H10 C H sing 1.08 N N
51 N11 H11 N H sing 0.97 N N
52 C12 H12 C H sing 1.09 N N
53 C13 H13 C H sing 1.09 N N
54 C13 H14 C H sing 1.09 N N
55 N14 H15 N H sing 1.01 N N
56 C15 H17 C H sing 1.09 N N
57 C15 H18 C H sing 1.09 N N
58 C16 H19 C H sing 1.08 N N
59 C19 H20 C H sing 1.08 N N
60 C20 H21 C H sing 1.08 N N
61 C21 H22 C H sing 1.08 N N
62 C24 H23 C H sing 1.08 N N
63 C25 H24 C H sing 1.08 N N
64 C27 H25 C H sing 1.09 N N
65 C27 H26 C H sing 1.09 N N
66 C29 H27 C H sing 1.09 N N
67 C30 H28 C H sing 1.09 N N
68 C30 H29 C H sing 1.09 N N
69 C32 H30 C H sing 1.09 N N
70 C34 H31 C H sing 1.09 N N
71 C34 H32 C H sing 1.09 N N
72 N28 H33 N H sing 1.01 N N
73 C31 H35 C H sing 1.09 N N
74 C31 H36 C H sing 1.09 N N
75 O33 H37 O H sing 0.97 N N
76 C36 H38 C H sing 1.08 N N