Chemical Components in the PDB

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PDBeChem : Chemical Bonds

 Molecule : Y5D    

Bonds between two atoms of the molecule

Total Number of Bonds: 78


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 O41 S02 O S doub 1.42 N N
2 O01 S02 O S doub 1.42 N N
3 C39 S02 C S sing 1.81 N N
4 C39 C40 C C sing 1.53 N N
5 S02 N03 S N sing 1.66 N N
6 N03 C38 N C sing 1.48 N N
7 N03 C04 N C sing 1.48 N N
8 C38 C05 C C sing 1.54 N N
9 C04 C05 C C sing 1.54 N N
10 C31 C30 C C sing 1.53 N N
11 C31 C25 C C sing 1.53 N N
12 C30 N28 C N sing 1.47 N N
13 N37 C36 N C doub 1.31 N Y
14 N37 N09 N N sing 1.4 N Y
15 C36 C11 C C sing 1.41 N Y
16 N09 C05 N C sing 1.47 N N
17 N09 C10 N C sing 1.35 N Y
18 F33 C32 F C sing 1.35 N N
19 C05 C06 C C sing 1.53 N N
20 C11 C10 C C doub 1.37 N Y
21 C11 C12 C C sing 1.48 N N
22 C12 N35 C N doub 1.33 N Y
23 C12 C13 C C sing 1.4 N Y
24 C32 C34 C C doub 1.38 N Y
25 C32 C24 C C sing 1.39 N Y
26 C14 C13 C C sing 1.46 N Y
27 C14 C15 C C doub 1.34 N Y
28 C34 C21 C C sing 1.39 N Y
29 C25 C24 C C sing 1.51 N N
30 C25 C26 C C sing 1.53 N N
31 N35 C19 N C sing 1.33 N Y
32 C13 C17 C C doub 1.41 N Y
33 C24 C23 C C doub 1.38 N Y
34 C15 N16 C N sing 1.37 N Y
35 N28 C29 N C sing 1.47 N N
36 N28 C27 N C sing 1.47 N N
37 C21 N20 C N sing 1.4 N N
38 C21 C22 C C doub 1.39 N Y
39 C19 N20 C N sing 1.39 N N
40 C19 N18 C N doub 1.32 N Y
41 C17 N16 C N sing 1.37 N Y
42 C17 N18 C N sing 1.33 N Y
43 C23 C22 C C sing 1.38 N Y
44 C06 C07 C C sing 1.47 N N
45 C26 C27 C C sing 1.53 N N
46 C07 N08 C N trip 1.14 N N
47 C10 H101 C H sing 1.08 N N
48 C15 H151 C H sing 1.08 N N
49 C22 H221 C H sing 1.08 N N
50 C26 H261 C H sing 1.09 N N
51 C26 H262 C H sing 1.09 N N
52 C04 H042 C H sing 1.09 N N
53 C04 H041 C H sing 1.09 N N
54 C06 H061 C H sing 1.09 N N
55 C06 H062 C H sing 1.09 N N
56 C14 H141 C H sing 1.08 N N
57 C23 H231 C H sing 1.08 N N
58 C25 H251 C H sing 1.09 N N
59 C27 H272 C H sing 1.09 N N
60 C27 H271 C H sing 1.09 N N
61 C29 H291 C H sing 1.09 N N
62 C29 H293 C H sing 1.09 N N
63 C29 H292 C H sing 1.09 N N
64 C30 H302 C H sing 1.09 N N
65 C30 H301 C H sing 1.09 N N
66 C31 H312 C H sing 1.09 N N
67 C31 H311 C H sing 1.09 N N
68 C34 H341 C H sing 1.08 N N
69 C36 H361 C H sing 1.08 N N
70 C38 H382 C H sing 1.09 N N
71 C38 H381 C H sing 1.09 N N
72 C39 H392 C H sing 1.09 N N
73 C39 H391 C H sing 1.09 N N
74 C40 H402 C H sing 1.09 N N
75 C40 H403 C H sing 1.09 N N
76 C40 H401 C H sing 1.09 N N
77 N16 H161 N H sing 0.97 N N
78 N20 H201 N H sing 0.97 N N